Johnson WE - Search Results

1

A Western-type dietary pattern and atorvastatin induce epicardial adipose tissue interferon signaling in the Ossabaw pig.

Walker ME, Matthan NR, Solano-Aguilar G, Jang S, Lakshman S, Molokin A, Faits T, Urban JF Jr, Johnson WE, Lamon-Fava S, Lichtenstein AH. Walker ME, et al. Among authors: johnson we. J Nutr Biochem. 2019 May;67:212-218. doi: 10.1016/j.jnutbio.2019.02.003. Epub 2019 Feb 20. J Nutr Biochem. 2019. PMID: 30981985 Free PMC article.

2

A Western-Type Dietary Pattern Induces an Atherogenic Gene Expression Profile in the Coronary Arteries of the Ossabaw Pig.

Walker ME, Matthan NR, Lamon-Fava S, Solano-Aguilar G, Jang S, Lakshman S, Molokin A, Urban JF Jr, Faits T, Johnson WE, Lichtenstein AH. Walker ME, et al. Among authors: johnson we. Curr Dev Nutr. 2019 Mar 30;3(5):nzz023. doi: 10.1093/cdn/nzz023. eCollection 2019 May. Curr Dev Nutr. 2019. PMID: 31049488 Free PMC article.

3

Exploring changes in the human gut microbiota and microbial-derived metabolites in response to diets enriched in simple, refined, or unrefined carbohydrate-containing foods: a post hoc analysis of a randomized clinical trial.

Faits T, Walker ME, Rodriguez-Morato J, Meng H, Gervis JE, Galluccio JM, Lichtenstein AH, Johnson WE, Matthan NR. Faits T, et al. Among authors: johnson we. Am J Clin Nutr. 2020 Dec 10;112(6):1631-1641. doi: 10.1093/ajcn/nqaa254. Am J Clin Nutr. 2020. PMID: 32936872 Free PMC article.

4

animalcules: interactive microbiome analytics and visualization in R.

Zhao Y, Federico A, Faits T, Manimaran S, Segrè D, Monti S, Johnson WE. Zhao Y, et al. Among authors: johnson we. Microbiome. 2021 Mar 28;9(1):76. doi: 10.1186/s40168-021-01013-0. Microbiome. 2021. PMID: 33775256 Free PMC article.

5

Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data.

Odom AR, Faits T, Castro-Nallar E, Crandall KA, Johnson WE. Odom AR, et al. Among authors: johnson we. Sci Rep. 2023 Aug 26;13(1):13957. doi: 10.1038/s41598-023-40799-x. Sci Rep. 2023. PMID: 37633998 Free PMC article.

6

Exploring Host-Microbe Interactions in Lung Cancer.

Zhao Y, Johnson WE. Zhao Y, et al. Among authors: johnson we. Am J Respir Crit Care Med. 2018 Nov 1;198(9):1116-1118. doi: 10.1164/rccm.201807-1225ED. Am J Respir Crit Care Med. 2018. PMID: 30063838 No abstract available.

7

Activity of distinct growth factor receptor network components in breast tumors uncovers two biologically relevant subtypes.

Rahman M, MacNeil SM, Jenkins DF, Shrestha G, Wyatt SR, McQuerry JA, Piccolo SR, Heiser LM, Gray JW, Johnson WE, Bild AH. Rahman M, et al. Among authors: johnson we. Genome Med. 2017 Apr 26;9(1):40. doi: 10.1186/s13073-017-0429-x. Genome Med. 2017. PMID: 28446242 Free PMC article.

8

scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data.

Wang Z, Hu J, Johnson WE, Campbell JD. Wang Z, et al. Among authors: johnson we. BMC Bioinformatics. 2019 May 2;20(1):222. doi: 10.1186/s12859-019-2797-2. BMC Bioinformatics. 2019. PMID: 31046658 Free PMC article.

9

ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways.

Shen Y, Rahman M, Piccolo SR, Gusenleitner D, El-Chaar NN, Cheng L, Monti S, Bild AH, Johnson WE. Shen Y, et al. Among authors: johnson we. Bioinformatics. 2015 Jun 1;31(11):1745-53. doi: 10.1093/bioinformatics/btv031. Epub 2015 Jan 22. Bioinformatics. 2015. PMID: 25617415 Free PMC article.

10

Decontamination of ambient RNA in single-cell RNA-seq with DecontX.

Yang S, Corbett SE, Koga Y, Wang Z, Johnson WE, Yajima M, Campbell JD. Yang S, et al. Among authors: johnson we. Genome Biol. 2020 Mar 5;21(1):57. doi: 10.1186/s13059-020-1950-6. Genome Biol. 2020. PMID: 32138770 Free PMC article.

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