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A Multireporter Bacterial 2-Hybrid Assay for the High-Throughput and Dynamic Assay of PDZ Domain-Peptide Interactions.
ACS Synth Biol. 2019 May 17;8(5):918-928. doi: 10.1021/acssynbio.8b00499. Epub 2019 Apr 18.
ACS Synth Biol. 2019.
PMID: 30969105
Free PMC article.
The geometric influence on the Cys2His2 zinc finger domain and functional plasticity.
Mueller AL, Corbi-Verge C, Giganti DO, Ichikawa DM, Spencer JM, MacRae M, Garton M, Kim PM, Noyes MB.
Mueller AL, et al. Among authors: ichikawa dm.
Nucleic Acids Res. 2020 Jun 19;48(11):6382-6402. doi: 10.1093/nar/gkaa291.
Nucleic Acids Res. 2020.
PMID: 32383734
Free PMC article.
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Engineered dual selection for directed evolution of SpCas9 PAM specificity.
Goldberg GW, Spencer JM, Giganti DO, Camellato BR, Agmon N, Ichikawa DM, Boeke JD, Noyes MB.
Goldberg GW, et al. Among authors: ichikawa dm.
Nat Commun. 2021 Jan 13;12(1):349. doi: 10.1038/s41467-020-20650-x.
Nat Commun. 2021.
PMID: 33441553
Free PMC article.
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Oncogenic inspiration for programmable activators.
Ichikawa D, Noyes M.
Ichikawa D, et al.
Cell Genom. 2022 Apr 13;2(4):100122. doi: 10.1016/j.xgen.2022.100122. eCollection 2022 Apr 13.
Cell Genom. 2022.
PMID: 36776529
Free PMC article.
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Manipulating the 3D organization of the largest synthetic yeast chromosome.
Zhang W, Lazar-Stefanita L, Yamashita H, Shen MJ, Mitchell LA, Kurasawa H, Lobzaev E, Fanfani V, Haase MAB, Sun X, Jiang Q, Goldberg GW, Ichikawa DM, Lauer SL, McCulloch LH, Easo N, Lin SJ, Camellato BR, Zhu Y, Cai J, Xu Z, Zhao Y, Sacasa M; Build-A-Genome Class; Noyes MB, Bader JS, Deutsch S, Stracquadanio G, Aizawa Y, Dai J, Boeke JD.
Zhang W, et al. Among authors: ichikawa dm.
Mol Cell. 2023 Dec 7;83(23):4424-4437.e5. doi: 10.1016/j.molcel.2023.10.015. Epub 2023 Nov 8.
Mol Cell. 2023.
PMID: 37944526
Free article.
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Differentiation of human and murine induced pluripotent stem cells to microglia-like cells.
Pandya H, Shen MJ, Ichikawa DM, Sedlock AB, Choi Y, Johnson KR, Kim G, Brown MA, Elkahloun AG, Maric D, Sweeney CL, Gossa S, Malech HL, McGavern DB, Park JK.
Pandya H, et al. Among authors: ichikawa dm.
Nat Neurosci. 2017 May;20(5):753-759. doi: 10.1038/nn.4534. Epub 2017 Mar 2.
Nat Neurosci. 2017.
PMID: 28253233
Free PMC article.
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A universal deep-learning model for zinc finger design enables transcription factor reprogramming.
Ichikawa DM, Abdin O, Alerasool N, Kogenaru M, Mueller AL, Wen H, Giganti DO, Goldberg GW, Adams S, Spencer JM, Razavi R, Nim S, Zheng H, Gionco C, Clark FT, Strokach A, Hughes TR, Lionnet T, Taipale M, Kim PM, Noyes MB.
Ichikawa DM, et al.
Nat Biotechnol. 2023 Aug;41(8):1117-1129. doi: 10.1038/s41587-022-01624-4. Epub 2023 Jan 26.
Nat Biotechnol. 2023.
PMID: 36702896
Free PMC article.
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