Youkharibache P - Search Results

1

Protodomains: Symmetry-Related Supersecondary Structures in Proteins and Self-Complementarity.

Youkharibache P. Youkharibache P. Methods Mol Biol. 2019;1958:187-219. doi: 10.1007/978-1-4939-9161-7_10. Methods Mol Biol. 2019. PMID: 30945220 Free PMC article.

2

Systematic detection of internal symmetry in proteins using CE-Symm.

Myers-Turnbull D, Bliven SE, Rose PW, Aziz ZK, Youkharibache P, Bourne PE, Prlić A. Myers-Turnbull D, et al. Among authors: youkharibache p. J Mol Biol. 2014 May 29;426(11):2255-68. doi: 10.1016/j.jmb.2014.03.010. Epub 2014 Mar 26. J Mol Biol. 2014. PMID: 24681267 Free PMC article.

3

Pseudo-Symmetric Assembly of Protodomains as a Common Denominator in the Evolution of Polytopic Helical Membrane Proteins.

Youkharibache P, Tran A, Abrol R. Youkharibache P, et al. J Mol Evol. 2020 May;88(4):319-344. doi: 10.1007/s00239-020-09934-4. Epub 2020 Mar 18. J Mol Evol. 2020. PMID: 32189026 Free PMC article.

4

Topological and Structural Plasticity of the Single Ig Fold and the Double Ig Fold Present in CD19.

Youkharibache P. Youkharibache P. Biomolecules. 2021 Aug 30;11(9):1290. doi: 10.3390/biom11091290. Biomolecules. 2021. PMID: 34572502 Free PMC article.

5

iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures.

Wang J, Youkharibache P, Zhang D, Lanczycki CJ, Geer RC, Madej T, Phan L, Ward M, Lu S, Marchler GH, Wang Y, Bryant SH, Geer LY, Marchler-Bauer A. Wang J, et al. Among authors: youkharibache p. Bioinformatics. 2020 Jan 1;36(1):131-135. doi: 10.1093/bioinformatics/btz502. Bioinformatics. 2020. PMID: 31218344 Free PMC article.

6

3DVizSNP: a tool for rapidly visualizing missense mutations identified in high throughput experiments in iCn3D.

Sierk M, Ratnayake S, Wagle MM, Chen B, Park B, Wang J, Youkharibache P, Meerzaman D. Sierk M, et al. Among authors: youkharibache p. BMC Bioinformatics. 2023 Jun 9;24(1):244. doi: 10.1186/s12859-023-05370-5. BMC Bioinformatics. 2023. PMID: 37296383 Free PMC article.

7

The CD8α hinge is intrinsically disordered with a dynamic exchange that includes proline cis-trans isomerization.

Chen X, Mirazee JM, Skorupka KA, Matsuo H, Youkharibache P, Taylor N, Walters KJ. Chen X, et al. Among authors: youkharibache p. J Magn Reson. 2022 Jul;340:107234. doi: 10.1016/j.jmr.2022.107234. Epub 2022 May 13. J Magn Reson. 2022. PMID: 35617919 Free PMC article.

8

The Small β-Barrel Domain: A Survey-Based Structural Analysis.

Youkharibache P, Veretnik S, Li Q, Stanek KA, Mura C, Bourne PE. Youkharibache P, et al. Structure. 2019 Jan 2;27(1):6-26. doi: 10.1016/j.str.2018.09.012. Epub 2018 Nov 1. Structure. 2019. PMID: 30393050 Free article. Review.

9

Sm/Lsm genes provide a glimpse into the early evolution of the spliceosome.

Veretnik S, Wills C, Youkharibache P, Valas RE, Bourne PE. Veretnik S, et al. Among authors: youkharibache p. PLoS Comput Biol. 2009 Mar;5(3):e1000315. doi: 10.1371/journal.pcbi.1000315. Epub 2009 Mar 13. PLoS Comput Biol. 2009. PMID: 19282982 Free PMC article.

10

Using iCn3D and the World Wide Web for structure-based collaborative research: Analyzing molecular interactions at the root of COVID-19.

Youkharibache P, Cachau R, Madej T, Wang J. Youkharibache P, et al. bioRxiv [Preprint]. 2020 Jul 6:2020.07.01.182964. doi: 10.1101/2020.07.01.182964. bioRxiv. 2020. PMID: 32637961 Free PMC article. Preprint.

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