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Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming.
Ohlin M, Scheepers C, Corcoran M, Lees WD, Busse CE, Bagnara D, Thörnqvist L, Bürckert JP, Jackson KJL, Ralph D, Schramm CA, Marthandan N, Breden F, Scott J, Matsen Iv FA, Greiff V, Yaari G, Kleinstein SH, Christley S, Sherkow JS, Kossida S, Lefranc MP, van Zelm MC, Watson CT, Collins AM. Ohlin M, et al. Among authors: ralph d. Front Immunol. 2019 Mar 18;10:435. doi: 10.3389/fimmu.2019.00435. eCollection 2019. Front Immunol. 2019. PMID: 30936866 Free PMC article. Review.
AIRR Community Standardized Representations for Annotated Immune Repertoires.
Vander Heiden JA, Marquez S, Marthandan N, Bukhari SAC, Busse CE, Corrie B, Hershberg U, Kleinstein SH, Matsen Iv FA, Ralph DK, Rosenfeld AM, Schramm CA; AIRR Community; Christley S, Laserson U. Vander Heiden JA, et al. Front Immunol. 2018 Sep 28;9:2206. doi: 10.3389/fimmu.2018.02206. eCollection 2018. Front Immunol. 2018. PMID: 30323809 Free PMC article.
Kappa chain maturation helps drive rapid development of an infant HIV-1 broadly neutralizing antibody lineage.
Simonich CA, Doepker L, Ralph D, Williams JA, Dhar A, Yaffe Z, Gentles L, Small CT, Oliver B, Vigdorovich V, Mangala Prasad V, Nduati R, Sather DN, Lee KK, Matsen Iv FA, Overbaugh J. Simonich CA, et al. Among authors: ralph d. Nat Commun. 2019 May 16;10(1):2190. doi: 10.1038/s41467-019-09481-7. Nat Commun. 2019. PMID: 31097697 Free PMC article.
AIRR community curation and standardised representation for immunoglobulin and T cell receptor germline sets.
Lees WD, Christley S, Peres A, Kos JT, Corrie B, Ralph D, Breden F, Cowell LG, Yaari G, Corcoran M, Karlsson Hedestam GB, Ohlin M, Collins AM, Watson CT, Busse CE; AIRR Community. Lees WD, et al. Among authors: ralph d. Immunoinformatics (Amst). 2023 Jun;10:100025. doi: 10.1016/j.immuno.2023.100025. Epub 2023 Feb 19. Immunoinformatics (Amst). 2023. PMID: 37388275 Free PMC article.
Single B cell transcriptomics identifies multiple isotypes of broadly neutralizing antibodies against flaviviruses.
Lubow J, Levoir LM, Ralph DK, Belmont L, Contreras M, Cartwright-Acar CH, Kikawa C, Kannan S, Davidson E, Duran V, Rebellon-Sanchez DE, Sanz AM, Rosso F, Doranz BJ, Einav S, Matsen Iv FA, Goo L. Lubow J, et al. PLoS Pathog. 2023 Oct 9;19(10):e1011722. doi: 10.1371/journal.ppat.1011722. eCollection 2023 Oct. PLoS Pathog. 2023. PMID: 37812640 Free PMC article.
AIRR-C IG Reference Sets: curated sets of immunoglobulin heavy and light chain germline genes.
Collins AM, Ohlin M, Corcoran M, Heather JM, Ralph D, Law M, Martínez-Barnetche J, Ye J, Richardson E, Gibson WS, Rodriguez OL, Peres A, Yaari G, Watson CT, Lees WD. Collins AM, et al. Among authors: ralph d. Front Immunol. 2024 Feb 9;14:1330153. doi: 10.3389/fimmu.2023.1330153. eCollection 2023. Front Immunol. 2024. PMID: 38406579 Free PMC article.
Likelihood-Based Inference of B Cell Clonal Families.
Ralph DK, Matsen FA 4th. Ralph DK, et al. PLoS Comput Biol. 2016 Oct 17;12(10):e1005086. doi: 10.1371/journal.pcbi.1005086. eCollection 2016 Oct. PLoS Comput Biol. 2016. PMID: 27749910 Free PMC article.
647 results