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Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions.
Stucky BJ, Balhoff JP, Barve N, Barve V, Brenskelle L, Brush MH, Dahlem GA, Gilbert JDJ, Kawahara AY, Keller O, Lucky A, Mayhew PJ, Plotkin D, Seltmann KC, Talamas E, Vaidya G, Walls R, Yoder M, Zhang G, Guralnick R. Stucky BJ, et al. Among authors: vaidya g. Biodivers Data J. 2019 Mar 13;7:e33303. doi: 10.3897/BDJ.7.e33303. eCollection 2019. Biodivers Data J. 2019. PMID: 30918448 Free PMC article.
Progress toward a universal biomedical data translator.
Fecho K, Thessen AE, Baranzini SE, Bizon C, Hadlock JJ, Huang S, Roper RT, Southall N, Ta C, Watkins PB, Williams MD, Xu H, Byrd W, Dančík V, Duby MP, Dumontier M, Glusman G, Harris NL, Hinderer EW, Hyde G, Johs A, Su AI, Qin G, Zhu Q; Biomedical Data Translator Consortium. Fecho K, et al. Clin Transl Sci. 2022 May 25;15(8):1838-47. doi: 10.1111/cts.13301. Online ahead of print. Clin Transl Sci. 2022. PMID: 35611543 Free PMC article. Review.
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science.
Unni DR, Moxon SAT, Bada M, Brush M, Bruskiewich R, Caufield JH, Clemons PA, Dancik V, Dumontier M, Fecho K, Glusman G, Hadlock JJ, Harris NL, Joshi A, Putman T, Qin G, Ramsey SA, Shefchek KA, Solbrig H, Soman K, Thessen AE, Haendel MA, Bizon C, Mungall CJ; Biomedical Data Translator Consortium. Unni DR, et al. Clin Transl Sci. 2022 Aug;15(8):1848-1855. doi: 10.1111/cts.13302. Epub 2022 Jun 6. Clin Transl Sci. 2022. PMID: 36125173 Free PMC article. Review.
COVID-KOP: integrating emerging COVID-19 data with the ROBOKOP database.
Korn D, Bobrowski T, Li M, Kebede Y, Wang P, Owen P, Vaidya G, Muratov E, Chirkova R, Bizon C, Tropsha A. Korn D, et al. Among authors: vaidya g. Bioinformatics. 2021 May 1;37(4):586-587. doi: 10.1093/bioinformatics/btaa718. Bioinformatics. 2021. PMID: 33175089 Free PMC article.
COVID-KOP: Integrating Emerging COVID-19 Data with the ROBOKOP Database.
Korn D, Bobrowski T, Li M, Kebede Y, Wang P, Owen P, Vaidya G, Muratov E, Chirkova R, Bizon C, Tropsha A. Korn D, et al. Among authors: vaidya g. ChemRxiv [Preprint]. 2020 Jun 18. doi: 10.26434/chemrxiv.12462623. ChemRxiv. 2020. PMID: 32601612 Free PMC article. Updated. Preprint.
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.
Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, Mirarab S, Rosenberg MS, Balhoff JP, Bik HM, Heath TA, Midford PE, Brown JW, McTavish EJ, Sukumaran J, Westneat M, Alfaro ME, Steele A, Jordan G. Stoltzfus A, et al. Among authors: vaidya g. BMC Bioinformatics. 2013 May 13;14:158. doi: 10.1186/1471-2105-14-158. BMC Bioinformatics. 2013. PMID: 23668630 Free PMC article.
80 results