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Folding kinetics of large RNAs.
Geis M, Flamm C, Wolfinger MT, Tanzer A, Hofacker IL, Middendorf M, Mandl C, Stadler PF, Thurner C. Geis M, et al. Among authors: hofacker il. J Mol Biol. 2008 May 23;379(1):160-73. doi: 10.1016/j.jmb.2008.02.064. Epub 2008 Mar 6. J Mol Biol. 2008. PMID: 18440024
BarMap: RNA folding on dynamic energy landscapes.
Hofacker IL, Flamm C, Heine C, Wolfinger MT, Scheuermann G, Stadler PF. Hofacker IL, et al. RNA. 2010 Jul;16(7):1308-16. doi: 10.1261/rna.2093310. Epub 2010 May 26. RNA. 2010. PMID: 20504954 Free PMC article.
A folding algorithm for extended RNA secondary structures.
Höner zu Siederdissen C, Bernhart SH, Stadler PF, Hofacker IL. Höner zu Siederdissen C, et al. Among authors: hofacker il. Bioinformatics. 2011 Jul 1;27(13):i129-36. doi: 10.1093/bioinformatics/btr220. Bioinformatics. 2011. PMID: 21685061 Free PMC article.
TSSAR: TSS annotation regime for dRNA-seq data.
Amman F, Wolfinger MT, Lorenz R, Hofacker IL, Stadler PF, Findeiß S. Amman F, et al. Among authors: hofacker il. BMC Bioinformatics. 2014 Mar 27;15:89. doi: 10.1186/1471-2105-15-89. BMC Bioinformatics. 2014. PMID: 24674136 Free PMC article.
SHAPE directed RNA folding.
Lorenz R, Luntzer D, Hofacker IL, Stadler PF, Wolfinger MT. Lorenz R, et al. Among authors: hofacker il. Bioinformatics. 2016 Jan 1;32(1):145-7. doi: 10.1093/bioinformatics/btv523. Epub 2015 Sep 9. Bioinformatics. 2016. PMID: 26353838 Free PMC article.
161 results