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BrAPI-an application programming interface for plant breeding applications.
Selby P, Abbeloos R, Backlund JE, Basterrechea Salido M, Bauchet G, Benites-Alfaro OE, Birkett C, Calaminos VC, Carceller P, Cornut G, Vasques Costa B, Edwards JD, Finkers R, Yanxin Gao S, Ghaffar M, Glaser P, Guignon V, Hok P, Kilian A, König P, Lagare JEB, Lange M, Laporte MA, Larmande P, LeBauer DS, Lyon DA, Marshall DS, Matthews D, Milne I, Mistry N, Morales N, Mueller LA, Neveu P, Papoutsoglou E, Pearce B, Perez-Masias I, Pommier C, Ramírez-González RH, Rathore A, Raquel AM, Raubach S, Rife T, Robbins K, Rouard M, Sarma C, Scholz U, Sempéré G, Shaw PD, Simon R, Soldevilla N, Stephen G, Sun Q, Tovar C, Uszynski G, Verouden M; BrAPI consortium. Selby P, et al. Among authors: birkett c. Bioinformatics. 2019 Oct 15;35(20):4147-4155. doi: 10.1093/bioinformatics/btz190. Bioinformatics. 2019. PMID: 30903186 Free PMC article.
Breedbase: a digital ecosystem for modern plant breeding.
Morales N, Ogbonna AC, Ellerbrock BJ, Bauchet GJ, Tantikanjana T, Tecle IY, Powell AF, Lyon D, Menda N, Simoes CC, Saha S, Hosmani P, Flores M, Panitz N, Preble RS, Agbona A, Rabbi I, Kulakow P, Peteti P, Kawuki R, Esuma W, Kanaabi M, Chelangat DM, Uba E, Olojede A, Onyeka J, Shah T, Karanja M, Egesi C, Tufan H, Paterne A, Asfaw A, Jannink JL, Wolfe M, Birkett CL, Waring DJ, Hershberger JM, Gore MA, Robbins KR, Rife T, Courtney C, Poland J, Arnaud E, Laporte MA, Kulembeka H, Salum K, Mrema E, Brown A, Bayo S, Uwimana B, Akech V, Yencho C, de Boeck B, Campos H, Swennen R, Edwards JD, Mueller LA. Morales N, et al. Among authors: birkett cl. G3 (Bethesda). 2022 Jul 6;12(7):jkac078. doi: 10.1093/g3journal/jkac078. G3 (Bethesda). 2022. PMID: 35385099 Free PMC article.
GrainGenes: a data-rich repository for small grains genetics and genomics.
Yao E, Blake VC, Cooper L, Wight CP, Michel S, Cagirici HB, Lazo GR, Birkett CL, Waring DJ, Jannink JL, Holmes I, Waters AJ, Eickholt DP, Sen TZ. Yao E, et al. Among authors: birkett cl. Database (Oxford). 2022 May 25;2022:baac034. doi: 10.1093/database/baac034. Database (Oxford). 2022. PMID: 35616118 Free PMC article.
Secreted peptidases contribute to virulence of fish pathogen Flavobacterium columnare.
Thunes NC, Mohammed HH, Evenhuis JP, Lipscomb RS, Pérez-Pascual D, Stevick RJ, Birkett C, Conrad RA, Ghigo JM, McBride MJ. Thunes NC, et al. Among authors: birkett c. Front Cell Infect Microbiol. 2023 Feb 3;13:1093393. doi: 10.3389/fcimb.2023.1093393. eCollection 2023. Front Cell Infect Microbiol. 2023. PMID: 36816589 Free PMC article.
Flavobacterium columnare ferric iron uptake systems are required for virulence.
Conrad RA, Evenhuis JP, Lipscomb RS, Pérez-Pascual D, Stevick RJ, Birkett C, Ghigo JM, McBride MJ. Conrad RA, et al. Among authors: birkett c. Front Cell Infect Microbiol. 2022 Oct 17;12:1029833. doi: 10.3389/fcimb.2022.1029833. eCollection 2022. Front Cell Infect Microbiol. 2022. PMID: 36325469 Free PMC article.
Type IX Secretion System Effectors and Virulence of the Model Flavobacterium columnare Strain MS-FC-4.
Thunes NC, Conrad RA, Mohammed HH, Zhu Y, Barbier P, Evenhuis JP, Perez-Pascual D, Ghigo JM, Lipscomb RS, Schneider JR, Li N, Erbes DH, Birkett C, LaFrentz BR, Welch TJ, McBride MJ. Thunes NC, et al. Among authors: birkett c. Appl Environ Microbiol. 2022 Feb 8;88(3):e0170521. doi: 10.1128/AEM.01705-21. Epub 2021 Nov 24. Appl Environ Microbiol. 2022. PMID: 34818105 Free PMC article.
61 results