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Page 1
Phylogenies from dynamic networks.
Metzig C, Ratmann O, Bezemer D, Colijn C. Metzig C, et al. Among authors: bezemer d. PLoS Comput Biol. 2019 Feb 26;15(2):e1006761. doi: 10.1371/journal.pcbi.1006761. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30807578 Free PMC article.
HIV Type 1 transmission networks among men having sex with men and heterosexuals in Kenya.
Bezemer D, Faria NR, Hassan A, Hamers RL, Mutua G, Anzala O, Mandaliya K, Cane P, Berkley JA, Rinke de Wit TF, Wallis C, Graham SM, Price MA, Coutinho RA, Sanders EJ. Bezemer D, et al. AIDS Res Hum Retroviruses. 2014 Feb;30(2):118-26. doi: 10.1089/aid.2013.0171. Epub 2013 Sep 17. AIDS Res Hum Retroviruses. 2014. PMID: 23947948 Free PMC article.
Dispersion of the HIV-1 Epidemic in Men Who Have Sex with Men in the Netherlands: A Combined Mathematical Model and Phylogenetic Analysis.
Bezemer D, Cori A, Ratmann O, van Sighem A, Hermanides HS, Dutilh BE, Gras L, Rodrigues Faria N, van den Hengel R, Duits AJ, Reiss P, de Wolf F, Fraser C; ATHENA observational cohort. Bezemer D, et al. PLoS Med. 2015 Nov 3;12(11):e1001898; discussion e1001898. doi: 10.1371/journal.pmed.1001898. eCollection 2015 Nov. PLoS Med. 2015. PMID: 26529093 Free PMC article.
A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model.
Nakagawa F, van Sighem A, Thiebaut R, Smith C, Ratmann O, Cambiano V, Albert J, Amato-Gauci A, Bezemer D, Campbell C, Commenges D, Donoghoe M, Ford D, Kouyos R, Lodwick R, Lundgren J, Pantazis N, Pharris A, Quinten C, Thorne C, Touloumi G, Delpech V, Phillips A; SSOPHIE project working group in EuroCoord. Nakagawa F, et al. Among authors: bezemer d. Epidemiology. 2016 Mar;27(2):247-56. doi: 10.1097/EDE.0000000000000423. Epidemiology. 2016. PMID: 26605814 Free PMC article.
Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.
Wymant C, Blanquart F, Golubchik T, Gall A, Bakker M, Bezemer D, Croucher NJ, Hall M, Hillebregt M, Ong SH, Ratmann O, Albert J, Bannert N, Fellay J, Fransen K, Gourlay A, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos R, Laeyendecker O, Liitsola K, Meyer L, Porter K, Ristola M, van Sighem A, Berkhout B, Cornelissen M, Kellam P, Reiss P, Fraser C; BEEHIVE Collaboration. Wymant C, et al. Among authors: bezemer d. Virus Evol. 2018 May 18;4(1):vey007. doi: 10.1093/ve/vey007. eCollection 2018 Jan. Virus Evol. 2018. PMID: 29876136 Free PMC article.
Many but small HIV-1 non-B transmission chains in the Netherlands.
Bezemer D, Blenkinsop A, Hall M, van Sighem A, Cornelissen M, Wessels E, van Kampen J, van de Laar T, Reiss P, Fraser C, Ratmann O. Bezemer D, et al. AIDS. 2022 Jan 1;36(1):83-94. doi: 10.1097/QAD.0000000000003074. AIDS. 2022. PMID: 34618753 Free PMC article.
Estimating the potential to prevent locally acquired HIV infections in a UNAIDS Fast-Track City, Amsterdam.
Blenkinsop A, Monod M, van Sighem A, Pantazis N, Bezemer D, Op de Coul E, van de Laar T, Fraser C, Prins M, Reiss P, de Bree GJ, Ratmann O; HIV Transmission Elimination AMsterdam (H-TEAM) collaboration. Blenkinsop A, et al. Among authors: bezemer d. Elife. 2022 Aug 3;11:e76487. doi: 10.7554/eLife.76487. Elife. 2022. PMID: 35920649 Free PMC article.
84 results