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Sorting by Weighted Reversals and Transpositions.
Rodrigues Oliveira A, Lima Brito K, Dias Z, Dias U. Rodrigues Oliveira A, et al. Among authors: dias u, dias z. J Comput Biol. 2019 May;26(5):420-431. doi: 10.1089/cmb.2018.0257. Epub 2019 Feb 19. J Comput Biol. 2019. PMID: 30785331
Heuristics for the transposition distance problem.
Dias U, Dias Z. Dias U, et al. Among authors: dias z. J Bioinform Comput Biol. 2013 Oct;11(5):1350013. doi: 10.1142/S0219720013500133. Epub 2013 Sep 12. J Bioinform Comput Biol. 2013. PMID: 24131057
Some approximation algorithm for this problem have been presented to date [Bafna V, Pevzner PA, SIAM J Discr Math11(2):224-240, 1998; Elias I, Hartman T, IEEE/ACM Trans Comput Biol Bioinform3(4):369-379, 2006; Mira CVG, Dias Z, Santos HP, Pinto GA, Walter ME, Proc 3 …
Some approximation algorithm for this problem have been presented to date [Bafna V, Pevzner PA, SIAM J Discr Math11(2):224-240, 1998; Elias …
A general heuristic for genome rearrangement problems.
Dias U, Galvão GR, Lintzmayer CN, Dias Z. Dias U, et al. Among authors: dias z. J Bioinform Comput Biol. 2014 Jun;12(3):1450012. doi: 10.1142/S0219720014500127. Epub 2014 Jun 2. J Bioinform Comput Biol. 2014. PMID: 24969750
Sorting signed permutations by short operations.
Galvão GR, Lee O, Dias Z. Galvão GR, et al. Among authors: dias z. Algorithms Mol Biol. 2015 Mar 25;10:12. doi: 10.1186/s13015-015-0040-x. eCollection 2015. Algorithms Mol Biol. 2015. PMID: 25838839 Free PMC article.
Sorting by weighted inversions considering length and symmetry.
Baudet C, Dias U, Dias Z. Baudet C, et al. Among authors: dias u, dias z. BMC Bioinformatics. 2015;16 Suppl 19(Suppl 19):S3. doi: 10.1186/1471-2105-16-S19-S3. Epub 2015 Dec 16. BMC Bioinformatics. 2015. PMID: 26695591 Free PMC article.
Sorting Circular Permutations by Super Short Reversals.
Galvao GR, Baudet C, Dias Z. Galvao GR, et al. Among authors: dias z. IEEE/ACM Trans Comput Biol Bioinform. 2017 May-Jun;14(3):620-633. doi: 10.1109/TCBB.2016.2515594. Epub 2016 Jan 7. IEEE/ACM Trans Comput Biol Bioinform. 2017. PMID: 26761858
Sorting permutations by prefix and suffix rearrangements.
Lintzmayer CN, Fertin G, Dias Z. Lintzmayer CN, et al. Among authors: dias z. J Bioinform Comput Biol. 2017 Feb;15(1):1750002. doi: 10.1142/S0219720017500020. Epub 2017 Feb 9. J Bioinform Comput Biol. 2017. PMID: 28201946
43 results