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Sorting by Weighted Reversals and Transpositions.
Rodrigues Oliveira A, Lima Brito K, Dias Z, Dias U. Rodrigues Oliveira A, et al. Among authors: dias u, dias z. J Comput Biol. 2019 May;26(5):420-431. doi: 10.1089/cmb.2018.0257. Epub 2019 Feb 19. J Comput Biol. 2019. PMID: 30785331
Heuristics for the transposition distance problem.
Dias U, Dias Z. Dias U, et al. Among authors: dias z. J Bioinform Comput Biol. 2013 Oct;11(5):1350013. doi: 10.1142/S0219720013500133. Epub 2013 Sep 12. J Bioinform Comput Biol. 2013. PMID: 24131057
The transposition distance problem is the minimum number of transpositions required to transform one genome into another. Recently, Bulteau et al. [Bulteau L, Fertin G, Rusu U, Automata, Languages and Programming, Vol. 6755 of Lecture Notes in Computer Science, pp. 654-665 …
The transposition distance problem is the minimum number of transpositions required to transform one genome into another. Recently, Bulteau …
A general heuristic for genome rearrangement problems.
Dias U, Galvão GR, Lintzmayer CN, Dias Z. Dias U, et al. Among authors: dias z. J Bioinform Comput Biol. 2014 Jun;12(3):1450012. doi: 10.1142/S0219720014500127. Epub 2014 Jun 2. J Bioinform Comput Biol. 2014. PMID: 24969750
Sorting by weighted inversions considering length and symmetry.
Baudet C, Dias U, Dias Z. Baudet C, et al. Among authors: dias u, dias z. BMC Bioinformatics. 2015;16 Suppl 19(Suppl 19):S3. doi: 10.1186/1471-2105-16-S19-S3. Epub 2015 Dec 16. BMC Bioinformatics. 2015. PMID: 26695591 Free PMC article.
Sorting signed circular permutations by super short operations.
Oliveira AR, Fertin G, Dias U, Dias Z. Oliveira AR, et al. Among authors: dias u, dias z. Algorithms Mol Biol. 2018 Jul 26;13:13. doi: 10.1186/s13015-018-0131-6. eCollection 2018. Algorithms Mol Biol. 2018. PMID: 30065782 Free PMC article.
Heuristics for the Reversal and Transposition Distance Problem.
Brito KL, Oliveira AR, Dias U, Dias Z. Brito KL, et al. Among authors: dias u, dias z. IEEE/ACM Trans Comput Biol Bioinform. 2020 Jan-Feb;17(1):2-13. doi: 10.1109/TCBB.2019.2945759. Epub 2019 Oct 7. IEEE/ACM Trans Comput Biol Bioinform. 2020. PMID: 31603793
Super short operations on both gene order and intergenic sizes.
Oliveira AR, Jean G, Fertin G, Dias U, Dias Z. Oliveira AR, et al. Among authors: dias u, dias z. Algorithms Mol Biol. 2019 Nov 5;14:21. doi: 10.1186/s13015-019-0156-5. eCollection 2019. Algorithms Mol Biol. 2019. PMID: 31709002 Free PMC article.
27 results