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Pseudogene repair driven by selection pressure applied in experimental evolution.
Anand A, Olson CA, Yang L, Sastry AV, Catoiu E, Choudhary KS, Phaneuf PV, Sandberg TE, Xu S, Hefner Y, Szubin R, Feist AM, Palsson BO. Anand A, et al. Among authors: yang l. Nat Microbiol. 2019 Mar;4(3):386-389. doi: 10.1038/s41564-018-0340-2. Epub 2019 Jan 28. Nat Microbiol. 2019. PMID: 30692668
Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data.
Yang L, Tan J, O'Brien EJ, Monk JM, Kim D, Li HJ, Charusanti P, Ebrahim A, Lloyd CJ, Yurkovich JT, Du B, Dräger A, Thomas A, Sun Y, Saunders MA, Palsson BO. Yang L, et al. Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):10810-5. doi: 10.1073/pnas.1501384112. Epub 2015 Aug 10. Proc Natl Acad Sci U S A. 2015. PMID: 26261351 Free PMC article.
Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow.
Brunk E, George KW, Alonso-Gutierrez J, Thompson M, Baidoo E, Wang G, Petzold CJ, McCloskey D, Monk J, Yang L, O'Brien EJ, Batth TS, Martin HG, Feist A, Adams PD, Keasling JD, Palsson BO, Lee TS. Brunk E, et al. Among authors: yang l. Cell Syst. 2016 May 25;2(5):335-46. doi: 10.1016/j.cels.2016.04.004. Epub 2016 May 19. Cell Syst. 2016. PMID: 27211860 Free PMC article.
solveME: fast and reliable solution of nonlinear ME models.
Yang L, Ma D, Ebrahim A, Lloyd CJ, Saunders MA, Palsson BO. Yang L, et al. BMC Bioinformatics. 2016 Sep 22;17(1):391. doi: 10.1186/s12859-016-1240-1. BMC Bioinformatics. 2016. PMID: 27659412 Free PMC article.
Quantitative time-course metabolomics in human red blood cells reveal the temperature dependence of human metabolic networks.
Yurkovich JT, Zielinski DC, Yang L, Paglia G, Rolfsson O, Sigurjónsson ÓE, Broddrick JT, Bordbar A, Wichuk K, Brynjólfsson S, Palsson S, Gudmundsson S, Palsson BO. Yurkovich JT, et al. Among authors: yang l. J Biol Chem. 2017 Dec 1;292(48):19556-19564. doi: 10.1074/jbc.M117.804914. Epub 2017 Oct 13. J Biol Chem. 2017. PMID: 29030425 Free PMC article.
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