Koenen EJM - Search Results

1

Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes.

Couvreur TLP, Helmstetter AJ, Koenen EJM, Bethune K, Brandão RD, Little SA, Sauquet H, Erkens RHJ. Couvreur TLP, et al. Among authors: koenen ejm. Front Plant Sci. 2019 Jan 9;9:1941. doi: 10.3389/fpls.2018.01941. eCollection 2018. Front Plant Sci. 2019. PMID: 30687347 Free PMC article.

2

Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae).

Nicholls JA, Pennington RT, Koenen EJ, Hughes CE, Hearn J, Bunnefeld L, Dexter KG, Stone GN, Kidner CA. Nicholls JA, et al. Front Plant Sci. 2015 Sep 17;6:710. doi: 10.3389/fpls.2015.00710. eCollection 2015. Front Plant Sci. 2015. PMID: 26442024 Free PMC article.

3

Precipitation is the main axis of tropical plant phylogenetic turnover across space and time.

Ringelberg JJ, Koenen EJM, Sauter B, Aebli A, Rando JG, Iganci JR, de Queiroz LP, Murphy DJ, Gaudeul M, Bruneau A, Luckow M, Lewis GP, Miller JT, Simon MF, Jordão LSB, Morales M, Bailey CD, Nageswara-Rao M, Nicholls JA, Loiseau O, Pennington RT, Dexter KG, Zimmermann NE, Hughes CE. Ringelberg JJ, et al. Among authors: koenen ejm. Sci Adv. 2023 Feb 17;9(7):eade4954. doi: 10.1126/sciadv.ade4954. Epub 2023 Feb 17. Sci Adv. 2023. PMID: 36800419 Free PMC article.

4

Phylogenomic analysis of 997 nuclear genes reveals the need for extensive generic re-delimitation in Caesalpinioideae (Leguminosae).

Ringelberg JJ, Koenen EJM, Iganci JR, de Queiroz LP, Murphy DJ, Gaudeul M, Bruneau A, Luckow M, Lewis GP, Hughes CE. Ringelberg JJ, et al. Among authors: koenen ejm. PhytoKeys. 2022 Aug 22;205:3-58. doi: 10.3897/phytokeys.205.85866. eCollection 2022. PhytoKeys. 2022. PMID: 36762007 Free PMC article.

5

Hybrid capture of 964 nuclear genes resolves evolutionary relationships in the mimosoid legumes and reveals the polytomous origins of a large pantropical radiation.

Koenen EJM, Kidner C, de Souza ÉR, Simon MF, Iganci JR, Nicholls JA, Brown GK, de Queiroz LP, Luckow M, Lewis GP, Pennington RT, Hughes CE. Koenen EJM, et al. Am J Bot. 2020 Dec;107(12):1710-1735. doi: 10.1002/ajb2.1568. Epub 2020 Nov 30. Am J Bot. 2020. PMID: 33253423 Free PMC article.

6

Mimosoid legume plastome evolution: IR expansion, tandem repeat expansions, and accelerated rate of evolution in clpP.

Dugas DV, Hernandez D, Koenen EJ, Schwarz E, Straub S, Hughes CE, Jansen RK, Nageswara-Rao M, Staats M, Trujillo JT, Hajrah NH, Alharbi NS, Al-Malki AL, Sabir JS, Bailey CD. Dugas DV, et al. Sci Rep. 2015 Nov 23;5:16958. doi: 10.1038/srep16958. Sci Rep. 2015. PMID: 26592928 Free PMC article.

7

Large-scale genomic sequence data resolve the deepest divergences in the legume phylogeny and support a near-simultaneous evolutionary origin of all six subfamilies.

Koenen EJM, Ojeda DI, Steeves R, Migliore J, Bakker FT, Wieringa JJ, Kidner C, Hardy OJ, Pennington RT, Bruneau A, Hughes CE. Koenen EJM, et al. New Phytol. 2020 Feb;225(3):1355-1369. doi: 10.1111/nph.16290. Epub 2019 Dec 6. New Phytol. 2020. PMID: 31665814 Free PMC article.

8

The Origin of the Legumes is a Complex Paleopolyploid Phylogenomic Tangle Closely Associated with the Cretaceous-Paleogene (K-Pg) Mass Extinction Event.

Koenen EJM, Ojeda DI, Bakker FT, Wieringa JJ, Kidner C, Hardy OJ, Pennington RT, Herendeen PS, Bruneau A, Hughes CE. Koenen EJM, et al. Syst Biol. 2021 Apr 15;70(3):508-526. doi: 10.1093/sysbio/syaa041. Syst Biol. 2021. PMID: 32483631 Free PMC article.

9

The innovation of the symbiosome has enhanced the evolutionary stability of nitrogen fixation in legumes.

de Faria SM, Ringelberg JJ, Gross E, Koenen EJM, Cardoso D, Ametsitsi GKD, Akomatey J, Maluk M, Tak N, Gehlot HS, Wright KM, Teaumroong N, Songwattana P, de Lima HC, Prin Y, Zartman CE, Sprent JI, Ardley J, Hughes CE, James EK. de Faria SM, et al. Among authors: koenen ejm. New Phytol. 2022 Sep;235(6):2365-2377. doi: 10.1111/nph.18321. Epub 2022 Jul 28. New Phytol. 2022. PMID: 35901264 Free PMC article.

10

Phylogenomic analyses reveal an exceptionally high number of evolutionary shifts in a florally diverse clade of African legumes.

Ojeda DI, Koenen E, Cervantes S, de la Estrella M, Banguera-Hinestroza E, Janssens SB, Migliore J, Demenou BB, Bruneau A, Forest F, Hardy OJ. Ojeda DI, et al. Mol Phylogenet Evol. 2019 Aug;137:156-167. doi: 10.1016/j.ympev.2019.05.002. Epub 2019 May 7. Mol Phylogenet Evol. 2019. PMID: 31075505 Free article.

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