Parks DH - Search Results

1

An evolving view of methane metabolism in the Archaea.

Evans PN, Boyd JA, Leu AO, Woodcroft BJ, Parks DH, Hugenholtz P, Tyson GW. Evans PN, et al. Among authors: parks dh. Nat Rev Microbiol. 2019 Apr;17(4):219-232. doi: 10.1038/s41579-018-0136-7. Epub 2019 Jan 21. Nat Rev Microbiol. 2019. PMID: 30664670 Review.

2

An expanded genomic representation of the phylum cyanobacteria.

Soo RM, Skennerton CT, Sekiguchi Y, Imelfort M, Paech SJ, Dennis PG, Steen JA, Parks DH, Tyson GW, Hugenholtz P. Soo RM, et al. Among authors: parks dh. Genome Biol Evol. 2014 May;6(5):1031-45. doi: 10.1093/gbe/evu073. Genome Biol Evol. 2014. PMID: 24709563 Free PMC article.

3

STAMP: statistical analysis of taxonomic and functional profiles.

Parks DH, Tyson GW, Hugenholtz P, Beiko RG. Parks DH, et al. Bioinformatics. 2014 Nov 1;30(21):3123-4. doi: 10.1093/bioinformatics/btu494. Epub 2014 Jul 23. Bioinformatics. 2014. PMID: 25061070 Free PMC article.

4

GroopM: an automated tool for the recovery of population genomes from related metagenomes.

Imelfort M, Parks D, Woodcroft BJ, Dennis P, Hugenholtz P, Tyson GW. Imelfort M, et al. PeerJ. 2014 Sep 30;2:e603. doi: 10.7717/peerj.603. eCollection 2014. PeerJ. 2014. PMID: 25289188 Free PMC article.

5

First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking.

Sekiguchi Y, Ohashi A, Parks DH, Yamauchi T, Tyson GW, Hugenholtz P. Sekiguchi Y, et al. Among authors: parks dh. PeerJ. 2015 Jan 27;3:e740. doi: 10.7717/peerj.740. eCollection 2015. PeerJ. 2015. PMID: 25650158 Free PMC article.

6

A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes.

Abdul Rahman N, Parks DH, Willner DL, Engelbrektson AL, Goffredi SK, Warnecke F, Scheffrahn RH, Hugenholtz P. Abdul Rahman N, et al. Among authors: parks dh. Microbiome. 2015 Feb 25;3:5. doi: 10.1186/s40168-015-0067-8. eCollection 2015. Microbiome. 2015. PMID: 25830022 Free PMC article.

7

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. Parks DH, et al. Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14. Genome Res. 2015. PMID: 25977477 Free PMC article.

8

Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus.

Soo RM, Woodcroft BJ, Parks DH, Tyson GW, Hugenholtz P. Soo RM, et al. Among authors: parks dh. PeerJ. 2015 May 21;3:e968. doi: 10.7717/peerj.968. eCollection 2015. PeerJ. 2015. PMID: 26038723 Free PMC article.

9

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics.

Evans PN, Parks DH, Chadwick GL, Robbins SJ, Orphan VJ, Golding SD, Tyson GW. Evans PN, et al. Among authors: parks dh. Science. 2015 Oct 23;350(6259):434-8. doi: 10.1126/science.aac7745. Science. 2015. PMID: 26494757

10

Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage.

Yeoh YK, Sekiguchi Y, Parks DH, Hugenholtz P. Yeoh YK, et al. Among authors: parks dh. Mol Biol Evol. 2016 Apr;33(4):915-27. doi: 10.1093/molbev/msv281. Epub 2015 Nov 28. Mol Biol Evol. 2016. PMID: 26615204 Free PMC article.

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