Baller JA - Search Results

1

ZFN, TALEN and CRISPR-Cas9 mediated homology directed gene insertion in Arabidopsis: A disconnect between somatic and germinal cells.

Shan Q, Baltes NJ, Atkins P, Kirkland ER, Zhang Y, Baller JA, Lowder LG, Malzahn AA, Haugner JC 3rd, Seelig B, Voytas DF, Qi Y. Shan Q, et al. Among authors: baller ja. J Genet Genomics. 2018 Dec 20;45(12):681-684. doi: 10.1016/j.jgg.2018.07.011. Epub 2018 Oct 10. J Genet Genomics. 2018. PMID: 30598393 Free PMC article. No abstract available.

2

Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways.

Qi Y, Zhang Y, Zhang F, Baller JA, Cleland SC, Ryu Y, Starker CG, Voytas DF. Qi Y, et al. Among authors: baller ja. Genome Res. 2013 Mar;23(3):547-54. doi: 10.1101/gr.145557.112. Epub 2013 Jan 2. Genome Res. 2013. PMID: 23282329 Free PMC article.

3

Histone H2AX and the small RNA pathway modulate both non-homologous end-joining and homologous recombination in plants.

Qi Y, Zhang Y, Baller JA, Voytas DF. Qi Y, et al. Among authors: baller ja. Mutat Res. 2016 Jan;783:9-14. doi: 10.1016/j.mrfmmm.2015.12.002. Epub 2015 Dec 4. Mutat Res. 2016. PMID: 26687994

4

Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Cermak T, Doyle EL, Christian M, Wang L, Zhang Y, Schmidt C, Baller JA, Somia NV, Bogdanove AJ, Voytas DF. Cermak T, et al. Among authors: baller ja. Nucleic Acids Res. 2011 Jul;39(12):e82. doi: 10.1093/nar/gkr218. Epub 2011 Apr 14. Nucleic Acids Res. 2011. PMID: 21493687 Free PMC article.

5

Access to DNA establishes a secondary target site bias for the yeast retrotransposon Ty5.

Baller JA, Gao J, Voytas DF. Baller JA, et al. Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20351-6. doi: 10.1073/pnas.1103665108. Epub 2011 Jul 25. Proc Natl Acad Sci U S A. 2011. PMID: 21788500 Free PMC article.

6

Transcription activator-like effector nucleases enable efficient plant genome engineering.

Zhang Y, Zhang F, Li X, Baller JA, Qi Y, Starker CG, Bogdanove AJ, Voytas DF. Zhang Y, et al. Among authors: baller ja. Plant Physiol. 2013 Jan;161(1):20-7. doi: 10.1104/pp.112.205179. Epub 2012 Nov 2. Plant Physiol. 2013. PMID: 23124327 Free PMC article.

7

A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon.

Baller JA, Gao J, Stamenova R, Curcio MJ, Voytas DF. Baller JA, et al. Genome Res. 2012 Apr;22(4):704-13. doi: 10.1101/gr.129585.111. Epub 2012 Jan 4. Genome Res. 2012. PMID: 22219511 Free PMC article.

8

Retrotransposons. An RNA polymerase III subunit determines sites of retrotransposon integration.

Bridier-Nahmias A, Tchalikian-Cosson A, Baller JA, Menouni R, Fayol H, Flores A, Saïb A, Werner M, Voytas DF, Lesage P. Bridier-Nahmias A, et al. Among authors: baller ja. Science. 2015 May 1;348(6234):585-8. doi: 10.1126/science.1259114. Science. 2015. PMID: 25931562

9

Origin replication complex binding, nucleosome depletion patterns, and a primary sequence motif can predict origins of replication in a genome with epigenetic centromeres.

Tsai HJ, Baller JA, Liachko I, Koren A, Burrack LS, Hickman MA, Thevandavakkam MA, Rusche LN, Berman J. Tsai HJ, et al. Among authors: baller ja. mBio. 2014 Sep 2;5(5):e01703-14. doi: 10.1128/mBio.01703-14. mBio. 2014. PMID: 25182328 Free PMC article.

10

Putting genetic interactions in context through a global modular decomposition.

Bellay J, Atluri G, Sing TL, Toufighi K, Costanzo M, Ribeiro PS, Pandey G, Baller J, VanderSluis B, Michaut M, Han S, Kim P, Brown GW, Andrews BJ, Boone C, Kumar V, Myers CL. Bellay J, et al. Genome Res. 2011 Aug;21(8):1375-87. doi: 10.1101/gr.117176.110. Epub 2011 Jun 29. Genome Res. 2011. PMID: 21715556 Free PMC article.

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