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Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling.
Nir G, Farabella I, Pérez Estrada C, Ebeling CG, Beliveau BJ, Sasaki HM, Lee SD, Nguyen SC, McCole RB, Chattoraj S, Erceg J, AlHaj Abed J, Martins NMC, Nguyen HQ, Hannan MA, Russell S, Durand NC, Rao SSP, Kishi JY, Soler-Vila P, Di Pierro M, Onuchic JN, Callahan SP, Schreiner JM, Stuckey JA, Yin P, Aiden EL, Marti-Renom MA, Wu CT. Nir G, et al. Among authors: mccole rb. PLoS Genet. 2018 Dec 26;14(12):e1007872. doi: 10.1371/journal.pgen.1007872. eCollection 2018 Dec. PLoS Genet. 2018. PMID: 30586358 Free PMC article.
Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes.
Beliveau BJ, Boettiger AN, Avendaño MS, Jungmann R, McCole RB, Joyce EF, Kim-Kiselak C, Bantignies F, Fonseka CY, Erceg J, Hannan MA, Hoang HG, Colognori D, Lee JT, Shih WM, Yin P, Zhuang X, Wu CT. Beliveau BJ, et al. Among authors: mccole rb. Nat Commun. 2015 May 12;6:7147. doi: 10.1038/ncomms8147. Nat Commun. 2015. PMID: 25962338 Free PMC article.
Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes.
Beliveau BJ, Joyce EF, Apostolopoulos N, Yilmaz F, Fonseka CY, McCole RB, Chang Y, Li JB, Senaratne TN, Williams BR, Rouillard JM, Wu CT. Beliveau BJ, et al. Among authors: mccole rb. Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21301-6. doi: 10.1073/pnas.1213818110. Epub 2012 Dec 11. Proc Natl Acad Sci U S A. 2012. PMID: 23236188 Free PMC article.
The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos.
Erceg J, AlHaj Abed J, Goloborodko A, Lajoie BR, Fudenberg G, Abdennur N, Imakaev M, McCole RB, Nguyen SC, Saylor W, Joyce EF, Senaratne TN, Hannan MA, Nir G, Dekker J, Mirny LA, Wu CT. Erceg J, et al. Among authors: mccole rb. Nat Commun. 2019 Oct 3;10(1):4486. doi: 10.1038/s41467-019-12211-8. Nat Commun. 2019. PMID: 31582744 Free PMC article.
Genome-wide and parental allele-specific analysis of CTCF and cohesin DNA binding in mouse brain reveals a tissue-specific binding pattern and an association with imprinted differentially methylated regions.
Prickett AR, Barkas N, McCole RB, Hughes S, Amante SM, Schulz R, Oakey RJ. Prickett AR, et al. Among authors: mccole rb. Genome Res. 2013 Oct;23(10):1624-35. doi: 10.1101/gr.150136.112. Epub 2013 Jun 26. Genome Res. 2013. PMID: 23804403 Free PMC article.
15 results