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Quantifying differences in cell line population dynamics using CellPD.
Juarez EF, Lau R, Friedman SH, Ghaffarizadeh A, Jonckheere E, Agus DB, Mumenthaler SM, Macklin P. Juarez EF, et al. Among authors: macklin p. BMC Syst Biol. 2016 Sep 21;10(1):92. doi: 10.1186/s12918-016-0337-5. BMC Syst Biol. 2016. PMID: 27655224 Free PMC article.
Progress Towards Computational 3-D Multicellular Systems Biology.
Macklin P, Frieboes HB, Sparks JL, Ghaffarizadeh A, Friedman SH, Juarez EF, Jonckheere E, Mumenthaler SM. Macklin P, et al. Adv Exp Med Biol. 2016;936:225-246. doi: 10.1007/978-3-319-42023-3_12. Adv Exp Med Biol. 2016. PMID: 27739051 Free PMC article. Review.
A Review of Cell-Based Computational Modeling in Cancer Biology.
Metzcar J, Wang Y, Heiland R, Macklin P. Metzcar J, et al. Among authors: macklin p. JCO Clin Cancer Inform. 2019 Feb;3:1-13. doi: 10.1200/CCI.18.00069. JCO Clin Cancer Inform. 2019. PMID: 30715927 Free PMC article. Review.
xml2jupyter: Mapping parameters between XML and Jupyter widgets.
Heiland R, Mishler D, Zhang T, Bower E, Macklin P. Heiland R, et al. Among authors: macklin p. J Open Source Softw. 2019;4(39):10.21105/joss.01408. doi: 10.21105/joss.01408. Epub 2019 Jul 1. J Open Source Softw. 2019. PMID: 31342010 Free PMC article.
Learning-accelerated discovery of immune-tumour interactions.
Ozik J, Collier N, Heiland R, An G, Macklin P. Ozik J, et al. Among authors: macklin p. Mol Syst Des Eng. 2019 Aug 1;4(4):747-760. doi: 10.1039/c9me00036d. Epub 2019 Jun 7. Mol Syst Des Eng. 2019. PMID: 31497314 Free PMC article.
Iterative community-driven development of a SARS-CoV-2 tissue simulator.
Getz M, Wang Y, An G, Asthana M, Becker A, Cockrell C, Collier N, Craig M, Davis CL, Faeder JR, Ford Versypt AN, Mapder T, Gianlupi JF, Glazier JA, Hamis S, Heiland R, Hillen T, Hou D, Islam MA, Jenner AL, Kurtoglu F, Larkin CI, Liu B, Macfarlane F, Maygrundter P, Morel PA, Narayanan A, Ozik J, Pienaar E, Rangamani P, Saglam AS, Shoemaker JE, Smith AM, Weaver JJA, Macklin P. Getz M, et al. Among authors: macklin p. bioRxiv [Preprint]. 2021 Nov 10:2020.04.02.019075. doi: 10.1101/2020.04.02.019075. bioRxiv. 2021. PMID: 32511322 Free PMC article. Preprint.
79 results