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Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense.
Wang M, Tu L, Yuan D, Zhu D, Shen C, Li J, Liu F, Pei L, Wang P, Zhao G, Ye Z, Huang H, Yan F, Ma Y, Zhang L, Liu M, You J, Yang Y, Liu Z, Huang F, Li B, Qiu P, Zhang Q, Zhu L, Jin S, Yang X, Min L, Li G, Chen LL, Zheng H, Lindsey K, Lin Z, Udall JA, Zhang X. Wang M, et al. Among authors: zheng h. Nat Genet. 2019 Feb;51(2):224-229. doi: 10.1038/s41588-018-0282-x. Epub 2018 Dec 3. Nat Genet. 2019. PMID: 30510239
The genome of the cucumber, Cucumis sativus L.
Huang S, Li R, Zhang Z, Li L, Gu X, Fan W, Lucas WJ, Wang X, Xie B, Ni P, Ren Y, Zhu H, Li J, Lin K, Jin W, Fei Z, Li G, Staub J, Kilian A, van der Vossen EA, Wu Y, Guo J, He J, Jia Z, Ren Y, Tian G, Lu Y, Ruan J, Qian W, Wang M, Huang Q, Li B, Xuan Z, Cao J, Asan, Wu Z, Zhang J, Cai Q, Bai Y, Zhao B, Han Y, Li Y, Li X, Wang S, Shi Q, Liu S, Cho WK, Kim JY, Xu Y, Heller-Uszynska K, Miao H, Cheng Z, Zhang S, Wu J, Yang Y, Kang H, Li M, Liang H, Ren X, Shi Z, Wen M, Jian M, Yang H, Zhang G, Yang Z, Chen R, Liu S, Li J, Ma L, Liu H, Zhou Y, Zhao J, Fang X, Li G, Fang L, Li Y, Liu D, Zheng H, Zhang Y, Qin N, Li Z, Yang G, Yang S, Bolund L, Kristiansen K, Zheng H, Li S, Zhang X, Yang H, Wang J, Sun R, Zhang B, Jiang S, Wang J, Du Y, Li S. Huang S, et al. Among authors: zheng h. Nat Genet. 2009 Dec;41(12):1275-81. doi: 10.1038/ng.475. Epub 2009 Nov 1. Nat Genet. 2009. PMID: 19881527
Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea.
Cheng F, Sun R, Hou X, Zheng H, Zhang F, Zhang Y, Liu B, Liang J, Zhuang M, Liu Y, Liu D, Wang X, Li P, Liu Y, Lin K, Bucher J, Zhang N, Wang Y, Wang H, Deng J, Liao Y, Wei K, Zhang X, Fu L, Hu Y, Liu J, Cai C, Zhang S, Zhang S, Li F, Zhang H, Zhang J, Guo N, Liu Z, Liu J, Sun C, Ma Y, Zhang H, Cui Y, Freeling MR, Borm T, Bonnema G, Wu J, Wang X. Cheng F, et al. Among authors: zheng h. Nat Genet. 2016 Oct;48(10):1218-24. doi: 10.1038/ng.3634. Epub 2016 Aug 15. Nat Genet. 2016. PMID: 27526322
The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection.
Yang J, Liu D, Wang X, Ji C, Cheng F, Liu B, Hu Z, Chen S, Pental D, Ju Y, Yao P, Li X, Xie K, Zhang J, Wang J, Liu F, Ma W, Shopan J, Zheng H, Mackenzie SA, Zhang M. Yang J, et al. Among authors: zheng h. Nat Genet. 2016 Oct;48(10):1225-32. doi: 10.1038/ng.3657. Epub 2016 Sep 5. Nat Genet. 2016. PMID: 27595476 Free article.
Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits.
Du X, Huang G, He S, Yang Z, Sun G, Ma X, Li N, Zhang X, Sun J, Liu M, Jia Y, Pan Z, Gong W, Liu Z, Zhu H, Ma L, Liu F, Yang D, Wang F, Fan W, Gong Q, Peng Z, Wang L, Wang X, Xu S, Shang H, Lu C, Zheng H, Huang S, Lin T, Zhu Y, Li F. Du X, et al. Among authors: zheng h. Nat Genet. 2018 Jun;50(6):796-802. doi: 10.1038/s41588-018-0116-x. Epub 2018 May 7. Nat Genet. 2018. PMID: 29736014
Genome of an allotetraploid wild peanut Arachis monticola: a de novo assembly.
Yin D, Ji C, Ma X, Li H, Zhang W, Li S, Liu F, Zhao K, Li F, Li K, Ning L, He J, Wang Y, Zhao F, Xie Y, Zheng H, Zhang X, Zhang Y, Zhang J. Yin D, et al. Among authors: zheng h. Gigascience. 2018 Jun 1;7(6):giy066. doi: 10.1093/gigascience/giy066. Gigascience. 2018. PMID: 29931126 Free PMC article.
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