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A new method for evaluating the impacts of semantic similarity measures on the annotation of gene sets.
PLoS One. 2018 Nov 27;13(11):e0208037. doi: 10.1371/journal.pone.0208037. eCollection 2018.
PLoS One. 2018.
PMID: 30481204
Free PMC article.
Development of a fixed module repertoire for the analysis and interpretation of blood transcriptome data.
Altman MC, Rinchai D, Baldwin N, Toufiq M, Whalen E, Garand M, Syed Ahamed Kabeer B, Alfaki M, Presnell SR, Khaenam P, Ayllón-Benítez A, Mougin F, Thébault P, Chiche L, Jourde-Chiche N, Phillips JT, Klintmalm G, O'Garra A, Berry M, Bloom C, Wilkinson RJ, Graham CM, Lipman M, Lertmemongkolchai G, Bedognetti D, Thiebaut R, Kheradmand F, Mejias A, Ramilo O, Palucka K, Pascual V, Banchereau J, Chaussabel D.
Altman MC, et al. Among authors: ayllon benitez a.
Nat Commun. 2021 Jul 19;12(1):4385. doi: 10.1038/s41467-021-24584-w.
Nat Commun. 2021.
PMID: 34282143
Free PMC article.
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GSAn: an alternative to enrichment analysis for annotating gene sets.
Ayllon-Benitez A, Bourqui R, Thébault P, Mougin F.
Ayllon-Benitez A, et al.
NAR Genom Bioinform. 2020 Mar 14;2(2):lqaa017. doi: 10.1093/nargab/lqaa017. eCollection 2020 Jun.
NAR Genom Bioinform. 2020.
PMID: 33575577
Free PMC article.
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EPPO ontology: a semantic-driven approach for plant and pest codes representation.
Ayllón-Benitez A, Bernabé-Diaz JA, Espinoza-Arias P, Esnaola-Gonzalez I, Beeckman DSA, McCaig B, Hanzlik K, Cools T, Castro Iragorri C, Palacios N.
Ayllón-Benitez A, et al.
Front Artif Intell. 2023 Jun 19;6:1131667. doi: 10.3389/frai.2023.1131667. eCollection 2023.
Front Artif Intell. 2023.
PMID: 37404339
Free PMC article.
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