Smith SA - Search Results

1

Evolution of Portulacineae Marked by Gene Tree Conflict and Gene Family Expansion Associated with Adaptation to Harsh Environments.

Wang N, Yang Y, Moore MJ, Brockington SF, Walker JF, Brown JW, Liang B, Feng T, Edwards C, Mikenas J, Olivieri J, Hutchison V, Timoneda A, Stoughton T, Puente R, Majure LC, Eggli U, Smith SA. Wang N, et al. Among authors: smith sa. Mol Biol Evol. 2019 Jan 1;36(1):112-126. doi: 10.1093/molbev/msy200. Mol Biol Evol. 2019. PMID: 30371871

2

Angiosperm phylogeny: 17 genes, 640 taxa.

Soltis DE, Smith SA, Cellinese N, Wurdack KJ, Tank DC, Brockington SF, Refulio-Rodriguez NF, Walker JB, Moore MJ, Carlsward BS, Bell CD, Latvis M, Crawley S, Black C, Diouf D, Xi Z, Rushworth CA, Gitzendanner MA, Sytsma KJ, Qiu YL, Hilu KW, Davis CC, Sanderson MJ, Beaman RS, Olmstead RG, Judd WS, Donoghue MJ, Soltis PS. Soltis DE, et al. Among authors: smith sa. Am J Bot. 2011 Apr;98(4):704-30. doi: 10.3732/ajb.1000404. Epub 2011 Apr 8. Am J Bot. 2011. PMID: 21613169 Free article.

3

Optimizing de novo assembly of short-read RNA-seq data for phylogenomics.

Yang Y, Smith SA. Yang Y, et al. Among authors: smith sa. BMC Genomics. 2013 May 14;14:328. doi: 10.1186/1471-2164-14-328. BMC Genomics. 2013. PMID: 23672450 Free PMC article.

4

Analyzing and synthesizing phylogenies using tree alignment graphs.

Smith SA, Brown JW, Hinchliff CE. Smith SA, et al. PLoS Comput Biol. 2013;9(9):e1003223. doi: 10.1371/journal.pcbi.1003223. Epub 2013 Sep 26. PLoS Comput Biol. 2013. PMID: 24086118 Free PMC article.

5

Another look at the root of the angiosperms reveals a familiar tale.

Drew BT, Ruhfel BR, Smith SA, Moore MJ, Briggs BG, Gitzendanner MA, Soltis PS, Soltis DE. Drew BT, et al. Among authors: smith sa. Syst Biol. 2014 May;63(3):368-82. doi: 10.1093/sysbio/syt108. Epub 2014 Jan 3. Syst Biol. 2014. PMID: 24391149

6

Orthology inference in nonmodel organisms using transcriptomes and low-coverage genomes: improving accuracy and matrix occupancy for phylogenomics.

Yang Y, Smith SA. Yang Y, et al. Among authors: smith sa. Mol Biol Evol. 2014 Nov;31(11):3081-92. doi: 10.1093/molbev/msu245. Epub 2014 Aug 25. Mol Biol Evol. 2014. PMID: 25158799 Free PMC article.

7

Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing.

Yang Y, Moore MJ, Brockington SF, Soltis DE, Wong GK, Carpenter EJ, Zhang Y, Chen L, Yan Z, Xie Y, Sage RF, Covshoff S, Hibberd JM, Nelson MN, Smith SA. Yang Y, et al. Among authors: smith sa. Mol Biol Evol. 2015 Aug;32(8):2001-14. doi: 10.1093/molbev/msv081. Epub 2015 Apr 2. Mol Biol Evol. 2015. PMID: 25837578 Free PMC article.

8

Phylesystem: a git-based data store for community-curated phylogenetic estimates.

McTavish EJ, Hinchliff CE, Allman JF, Brown JW, Cranston KA, Holder MT, Rees JA, Smith SA. McTavish EJ, et al. Among authors: smith sa. Bioinformatics. 2015 Sep 1;31(17):2794-800. doi: 10.1093/bioinformatics/btv276. Epub 2015 May 4. Bioinformatics. 2015. PMID: 25940563 Free PMC article.

9

Lineage-specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales.

Brockington SF, Yang Y, Gandia-Herrero F, Covshoff S, Hibberd JM, Sage RF, Wong GK, Moore MJ, Smith SA. Brockington SF, et al. Among authors: smith sa. New Phytol. 2015 Sep;207(4):1170-80. doi: 10.1111/nph.13441. Epub 2015 May 13. New Phytol. 2015. PMID: 25966996 Free PMC article.

10

Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants.

Smith SA, Moore MJ, Brown JW, Yang Y. Smith SA, et al. BMC Evol Biol. 2015 Aug 5;15:150. doi: 10.1186/s12862-015-0423-0. BMC Evol Biol. 2015. PMID: 26239519 Free PMC article.

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