Lee DM - Search Results

1

Functional classification of long non-coding RNAs by k-mer content.

Kirk JM, Kim SO, Inoue K, Smola MJ, Lee DM, Schertzer MD, Wooten JS, Baker AR, Sprague D, Collins DW, Horning CR, Wang S, Chen Q, Weeks KM, Mucha PJ, Calabrese JM. Kirk JM, et al. Among authors: lee dm. Nat Genet. 2018 Oct;50(10):1474-1482. doi: 10.1038/s41588-018-0207-8. Epub 2018 Sep 17. Nat Genet. 2018. PMID: 30224646 Free PMC article.

2

SHAPE reveals transcript-wide interactions, complex structural domains, and protein interactions across the Xist lncRNA in living cells.

Smola MJ, Christy TW, Inoue K, Nicholson CO, Friedersdorf M, Keene JD, Lee DM, Calabrese JM, Weeks KM. Smola MJ, et al. Among authors: lee dm. Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10322-7. doi: 10.1073/pnas.1600008113. Epub 2016 Aug 30. Proc Natl Acad Sci U S A. 2016. PMID: 27578869 Free PMC article.

3

RETRACTED: A 5' fragment of Xist can sequester RNA produced from adjacent genes on chromatin.

Lee DM, Trotman JB, Cherney RE, Inoue K, Schertzer MD, Bischoff SR, Cowley DO, Calabrese JM. Lee DM, et al. Nucleic Acids Res. 2019 Jul 26;47(13):7049-7062. doi: 10.1093/nar/gkz432. Nucleic Acids Res. 2019. PMID: 31114903 Free PMC article. Retracted.

4

lncRNA-Induced Spread of Polycomb Controlled by Genome Architecture, RNA Abundance, and CpG Island DNA.

Schertzer MD, Braceros KCA, Starmer J, Cherney RE, Lee DM, Salazar G, Justice M, Bischoff SR, Cowley DO, Ariel P, Zylka MJ, Dowen JM, Magnuson T, Calabrese JM. Schertzer MD, et al. Among authors: lee dm. Mol Cell. 2019 Aug 8;75(3):523-537.e10. doi: 10.1016/j.molcel.2019.05.028. Epub 2019 Jun 27. Mol Cell. 2019. PMID: 31256989 Free PMC article.

5

Elements at the 5' end of Xist harbor SPEN-independent transcriptional antiterminator activity.

Trotman JB, Lee DM, Cherney RE, Kim SO, Inoue K, Schertzer MD, Bischoff SR, Cowley DO, Calabrese JM. Trotman JB, et al. Among authors: lee dm. Nucleic Acids Res. 2020 Oct 9;48(18):10500-10517. doi: 10.1093/nar/gkaa789. Nucleic Acids Res. 2020. PMID: 32986830 Free PMC article.

6

A piggyBac-based toolkit for inducible genome editing in mammalian cells.

Schertzer MD, Thulson E, Braceros KCA, Lee DM, Hinkle ER, Murphy RM, Kim SO, Vitucci ECM, Calabrese JM. Schertzer MD, et al. Among authors: lee dm. RNA. 2019 Aug;25(8):1047-1058. doi: 10.1261/rna.068932.118. Epub 2019 May 17. RNA. 2019. PMID: 31101683 Free PMC article.

7

RETRACTION: A 5' fragment of Xist can sequester RNA produced from adjacent genes on chromatin.

Lee DM, Trotman JB, Cherney RE, Inoue K, Schertzer MD, Bischoff SR, Cowley DO, Calabrese JM. Lee DM, et al. Nucleic Acids Res. 2020 Mar 18;48(5):2790. doi: 10.1093/nar/gkaa050. Nucleic Acids Res. 2020. PMID: 31989176 Free PMC article. No abstract available.

8

Origin of overstretching transitions in single-stranded nucleic acids.

Scholl ZN, Rabbi M, Lee D, Manson L, S-Gracz H, Marszalek PE. Scholl ZN, et al. Phys Rev Lett. 2013 Nov 1;111(18):188302. doi: 10.1103/PhysRevLett.111.188302. Epub 2013 Oct 31. Phys Rev Lett. 2013. PMID: 24237568

9

Combinatorial characterization of bacterial taxa-driven differences in the microbiome of oyster reefs.

Cyphert EL, Nand S, Franco G, Hajkowski M, Soto L, Lee DM, Ferner M, Zabin C, Blumenthal J, Deck A, Boyer K, Burrus K, Hernandez CJ, Anand A. Cyphert EL, et al. Among authors: lee dm. bioRxiv [Preprint]. 2024 May 16:2024.05.15.594453. doi: 10.1101/2024.05.15.594453. bioRxiv. 2024. PMID: 38798377 Free PMC article. Preprint.

10

RNA-Seq of an LPS-Induced Inflammation Model Reveals Transcriptional Profile Patterns of Inflammatory Processes.

Sheen K, Myung S, Lee DM, Yu S, Choi Y, Kim T, Kim J, Ji SG, Kim MS, Kim W, Lee Y, Kim MS, Park YC. Sheen K, et al. Among authors: lee dm. Life (Basel). 2024 Apr 26;14(5):558. doi: 10.3390/life14050558. Life (Basel). 2024. PMID: 38792580 Free PMC article.

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