Kudla G - Search Results

1

COMRADES determines in vivo RNA structures and interactions.

Ziv O, Gabryelska MM, Lun ATL, Gebert LFR, Sheu-Gruttadauria J, Meredith LW, Liu ZY, Kwok CK, Qin CF, MacRae IJ, Goodfellow I, Marioni JC, Kudla G, Miska EA. Ziv O, et al. Among authors: kudla g. Nat Methods. 2018 Oct;15(10):785-788. doi: 10.1038/s41592-018-0121-0. Epub 2018 Sep 10. Nat Methods. 2018. PMID: 30202058 Free PMC article.

2

RNA Conformation Capture by Proximity Ligation.

Kudla G, Wan Y, Helwak A. Kudla G, et al. Annu Rev Genomics Hum Genet. 2020 Aug 31;21:81-100. doi: 10.1146/annurev-genom-120219-073756. Epub 2020 Apr 22. Annu Rev Genomics Hum Genet. 2020. PMID: 32320281 Review.

3

In vivo structure and dynamics of the SARS-CoV-2 RNA genome.

Zhang Y, Huang K, Xie D, Lau JY, Shen W, Li P, Wang D, Zou Z, Shi S, Ren H, Wang Y, Mao Y, Jin M, Kudla G, Zhao Z. Zhang Y, et al. Among authors: kudla g. Nat Commun. 2021 Sep 28;12(1):5695. doi: 10.1038/s41467-021-25999-1. Nat Commun. 2021. PMID: 34584097 Free PMC article.

4

Global mapping of RNA homodimers in living cells.

Gabryelska MM, Badrock AP, Lau JY, O'Keefe RT, Crow YJ, Kudla G. Gabryelska MM, et al. Among authors: kudla g. Genome Res. 2022 May;32(5):956-967. doi: 10.1101/gr.275900.121. Epub 2022 Mar 24. Genome Res. 2022. PMID: 35332098 Free PMC article.

5

Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast.

Kudla G, Granneman S, Hahn D, Beggs JD, Tollervey D. Kudla G, et al. Proc Natl Acad Sci U S A. 2011 Jun 14;108(24):10010-5. doi: 10.1073/pnas.1017386108. Epub 2011 May 24. Proc Natl Acad Sci U S A. 2011. PMID: 21610164 Free PMC article.

6

Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding.

Helwak A, Kudla G, Dudnakova T, Tollervey D. Helwak A, et al. Among authors: kudla g. Cell. 2013 Apr 25;153(3):654-65. doi: 10.1016/j.cell.2013.03.043. Cell. 2013. PMID: 23622248 Free PMC article.

7

Hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data.

Travis AJ, Moody J, Helwak A, Tollervey D, Kudla G. Travis AJ, et al. Among authors: kudla g. Methods. 2014 Feb;65(3):263-73. doi: 10.1016/j.ymeth.2013.10.015. Epub 2013 Nov 6. Methods. 2014. PMID: 24211736 Free PMC article.

8

A pre-ribosomal RNA interaction network involving snoRNAs and the Rok1 helicase.

Martin R, Hackert P, Ruprecht M, Simm S, Brüning L, Mirus O, Sloan KE, Kudla G, Schleiff E, Bohnsack MT. Martin R, et al. Among authors: kudla g. RNA. 2014 Aug;20(8):1173-82. doi: 10.1261/rna.044669.114. Epub 2014 Jun 19. RNA. 2014. PMID: 24947498 Free PMC article.

9

Maf1-mediated regulation of yeast RNA polymerase III is correlated with CCA addition at the 3' end of tRNA precursors.

Foretek D, Nuc P, Żywicki M, Karlowski WM, Kudla G, Boguta M. Foretek D, et al. Among authors: kudla g. Gene. 2017 May 15;612:12-18. doi: 10.1016/j.gene.2016.08.033. Epub 2016 Aug 27. Gene. 2017. PMID: 27575455 Free PMC article.

10

RNase III CLASH in MRSA uncovers sRNA regulatory networks coupling metabolism to toxin expression.

McKellar SW, Ivanova I, Arede P, Zapf RL, Mercier N, Chu LC, Mediati DG, Pickering AC, Briaud P, Foster RG, Kudla G, Fitzgerald JR, Caldelari I, Carroll RK, Tree JJ, Granneman S. McKellar SW, et al. Among authors: kudla g. Nat Commun. 2022 Jun 22;13(1):3560. doi: 10.1038/s41467-022-31173-y. Nat Commun. 2022. PMID: 35732654 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

49 results

Search Page