Feinstein WP - Search Results

1

Binding site matching in rational drug design: algorithms and applications.

Naderi M, Lemoine JM, Govindaraj RG, Kana OZ, Feinstein WP, Brylinski M. Naderi M, et al. Among authors: feinstein wp. Brief Bioinform. 2019 Nov 27;20(6):2167-2184. doi: 10.1093/bib/bby078. Brief Bioinform. 2019. PMID: 30169563 Free PMC article. Review.

2

Structure-Based Drug Discovery Accelerated by Many-Core Devices.

Feinstein W, Brylinski M. Feinstein W, et al. Curr Drug Targets. 2016;17(14):1595-1609. doi: 10.2174/1389450117666160112112854. Curr Drug Targets. 2016. PMID: 26758669 Review.

3

eFindSite: improved prediction of ligand binding sites in protein models using meta-threading, machine learning and auxiliary ligands.

Brylinski M, Feinstein WP. Brylinski M, et al. Among authors: feinstein wp. J Comput Aided Mol Des. 2013 Jun;27(6):551-67. doi: 10.1007/s10822-013-9663-5. Epub 2013 Jul 10. J Comput Aided Mol Des. 2013. PMID: 23838840

4

Calculating an optimal box size for ligand docking and virtual screening against experimental and predicted binding pockets.

Feinstein WP, Brylinski M. Feinstein WP, et al. J Cheminform. 2015 May 15;7:18. doi: 10.1186/s13321-015-0067-5. eCollection 2015. J Cheminform. 2015. PMID: 26082804 Free PMC article.

5

eFindSite: Enhanced Fingerprint-Based Virtual Screening Against Predicted Ligand Binding Sites in Protein Models.

Feinstein WP, Brylinski M. Feinstein WP, et al. Mol Inform. 2014 Feb;33(2):135-50. doi: 10.1002/minf.201300143. Epub 2014 Feb 12. Mol Inform. 2014. PMID: 27485570

6

GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing.

Fang Y, Ding Y, Feinstein WP, Koppelman DM, Moreno J, Jarrell M, Ramanujam J, Brylinski M. Fang Y, et al. Among authors: feinstein wp. PLoS One. 2016 Jul 15;11(7):e0158898. doi: 10.1371/journal.pone.0158898. eCollection 2016. PLoS One. 2016. PMID: 27420300 Free PMC article.

7

GeauxDock: A novel approach for mixed-resolution ligand docking using a descriptor-based force field.

Ding Y, Fang Y, Feinstein WP, Ramanujam J, Koppelman DM, Moreno J, Brylinski M, Jarrell M. Ding Y, et al. Among authors: feinstein wp. J Comput Chem. 2015 Oct 15;36(27):2013-26. doi: 10.1002/jcc.24031. Epub 2015 Aug 6. J Comput Chem. 2015. PMID: 26250822

8

Developing eThread pipeline using SAGA-pilot abstraction for large-scale structural bioinformatics.

Ragothaman A, Boddu SC, Kim N, Feinstein W, Brylinski M, Jha S, Kim J. Ragothaman A, et al. Biomed Res Int. 2014;2014:348725. doi: 10.1155/2014/348725. Epub 2014 Jun 9. Biomed Res Int. 2014. PMID: 24995285 Free PMC article.

9

Accelerating the Pace of Protein Functional Annotation With Intel Xeon Phi Coprocessors.

Feinstein WP, Moreno J, Jarrell M, Brylinski M. Feinstein WP, et al. IEEE Trans Nanobioscience. 2015 Jun;14(4):429-439. doi: 10.1109/TNB.2015.2403776. Epub 2015 Mar 5. IEEE Trans Nanobioscience. 2015. PMID: 25769169

10

Estimating the magnitude of near-membrane PDE4 activity in living cells.

Xin W, Feinstein WP, Britain AL, Ochoa CD, Zhu B, Richter W, Leavesley SJ, Rich TC. Xin W, et al. Among authors: feinstein wp. Am J Physiol Cell Physiol. 2015 Sep 15;309(6):C415-24. doi: 10.1152/ajpcell.00090.2015. Epub 2015 Jul 22. Am J Physiol Cell Physiol. 2015. PMID: 26201952 Free PMC article.

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