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Functional characterization of alternatively spliced GSN in head and neck squamous cell carcinoma.
Transl Res. 2018 Dec;202:109-119. doi: 10.1016/j.trsl.2018.07.007. Epub 2018 Jul 26.
Transl Res. 2018.
PMID: 30118659
Free PMC article.
Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer.
Afsari B, Guo T, Considine M, Florea L, Kagohara LT, Stein-O'Brien GL, Kelley D, Flam E, Zambo KD, Ha PK, Geman D, Ochs MF, Califano JA, Gaykalova DA, Favorov AV, Fertig EJ.
Afsari B, et al.
Bioinformatics. 2018 Jun 1;34(11):1859-1867. doi: 10.1093/bioinformatics/bty004.
Bioinformatics. 2018.
PMID: 29342249
Free PMC article.
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A Novel Functional Splice Variant of AKT3 Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers.
Guo T, Sakai A, Afsari B, Considine M, Danilova L, Favorov AV, Yegnasubramanian S, Kelley DZ, Flam E, Ha PK, Khan Z, Wheelan SJ, Gutkind JS, Fertig EJ, Gaykalova DA, Califano J.
Guo T, et al. Among authors: kelley dz.
Cancer Res. 2017 Oct 1;77(19):5248-5258. doi: 10.1158/0008-5472.CAN-16-3106. Epub 2017 Jul 21.
Cancer Res. 2017.
PMID: 28733453
Free PMC article.
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Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks.
Kelley DZ, Flam EL, Izumchenko E, Danilova LV, Wulf HA, Guo T, Singman DA, Afsari B, Skaist AM, Considine M, Welch JA, Stavrovskaya E, Bishop JA, Westra WH, Khan Z, Koch WM, Sidransky D, Wheelan SJ, Califano JA, Favorov AV, Fertig EJ, Gaykalova DA.
Kelley DZ, et al.
Cancer Res. 2017 Dec 1;77(23):6538-6550. doi: 10.1158/0008-5472.CAN-17-0833. Epub 2017 Sep 25.
Cancer Res. 2017.
PMID: 28947419
Free PMC article.
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Differentially Methylated Super-Enhancers Regulate Target Gene Expression in Human Cancer.
Flam EL, Danilova L, Kelley DZ, Stavrovskaya E, Guo T, Considine M, Qian J, Califano JA, Favorov A, Fertig EJ, Gaykalova DA.
Flam EL, et al. Among authors: kelley dz.
Sci Rep. 2019 Oct 21;9(1):15034. doi: 10.1038/s41598-019-51018-x.
Sci Rep. 2019.
PMID: 31636280
Free PMC article.
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Chromatin structure regulates cancer-specific alternative splicing events in primary HPV-related oropharyngeal squamous cell carcinoma.
Guo T, Zambo KDA, Zamuner FT, Ou T, Hopkins C, Kelley DZ, Wulf HA, Winkler E, Erbe R, Danilova L, Considine M, Sidransky D, Favorov A, Florea L, Fertig EJ, Gaykalova DA.
Guo T, et al. Among authors: kelley dz.
Epigenetics. 2020 Sep;15(9):959-971. doi: 10.1080/15592294.2020.1741757. Epub 2020 Mar 22.
Epigenetics. 2020.
PMID: 32164487
Free PMC article.
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Epigenetic regulation of gene expression in cancer: techniques, resources and analysis.
Kagohara LT, Stein-O'Brien GL, Kelley D, Flam E, Wick HC, Danilova LV, Easwaran H, Favorov AV, Qian J, Gaykalova DA, Fertig EJ.
Kagohara LT, et al.
Brief Funct Genomics. 2018 Jan 1;17(1):49-63. doi: 10.1093/bfgp/elx018.
Brief Funct Genomics. 2018.
PMID: 28968850
Free PMC article.
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