Brooks AN - Search Results

1

An alternative splicing switch in FLNB promotes the mesenchymal cell state in human breast cancer.

Li J, Choi PS, Chaffer CL, Labella K, Hwang JH, Giacomelli AO, Kim JW, Ilic N, Doench JG, Ly SH, Dai C, Hagel K, Hong AL, Gjoerup O, Goel S, Ge JY, Root DE, Zhao JJ, Brooks AN, Weinberg RA, Hahn WC. Li J, et al. Among authors: brooks an. Elife. 2018 Jul 30;7:e37184. doi: 10.7554/eLife.37184. Elife. 2018. PMID: 30059005 Free PMC article.

2

Regulation of alternative splicing in Drosophila by 56 RNA binding proteins.

Brooks AN, Duff MO, May G, Yang L, Bolisetty M, Landolin J, Wan K, Sandler J, Booth BW, Celniker SE, Graveley BR, Brenner SE. Brooks AN, et al. Genome Res. 2015 Nov;25(11):1771-80. doi: 10.1101/gr.192518.115. Epub 2015 Aug 20. Genome Res. 2015. PMID: 26294686 Free PMC article.

3

Inflammation drives alternative first exon usage to regulate immune genes including a novel iron-regulated isoform of Aim2.

Robinson EK, Jagannatha P, Covarrubias S, Cattle M, Smaliy V, Safavi R, Shapleigh B, Abu-Shumays R, Jain M, Cloonan SM, Akeson M, Brooks AN, Carpenter S. Robinson EK, et al. Among authors: brooks an. Elife. 2021 May 28;10:e69431. doi: 10.7554/eLife.69431. Elife. 2021. PMID: 34047695 Free PMC article.

4

The coupling of alternative splicing and nonsense-mediated mRNA decay.

Lareau LF, Brooks AN, Soergel DA, Meng Q, Brenner SE. Lareau LF, et al. Among authors: brooks an. Adv Exp Med Biol. 2007;623:190-211. doi: 10.1007/978-0-387-77374-2_12. Adv Exp Med Biol. 2007. PMID: 18380348 Review.

5

Genomic basis for RNA alterations in cancer.

PCAWG Transcriptome Core Group; Calabrese C, Davidson NR, Demircioğlu D, Fonseca NA, He Y, Kahles A, Lehmann KV, Liu F, Shiraishi Y, Soulette CM, Urban L, Greger L, Li S, Liu D, Perry MD, Xiang Q, Zhang F, Zhang J, Bailey P, Erkek S, Hoadley KA, Hou Y, Huska MR, Kilpinen H, Korbel JO, Marin MG, Markowski J, Nandi T, Pan-Hammarström Q, Pedamallu CS, Siebert R, Stark SG, Su H, Tan P, Waszak SM, Yung C, Zhu S, Awadalla P, Creighton CJ, Meyerson M, Ouellette BFF, Wu K, Yang H; PCAWG Transcriptome Working Group; Brazma A, Brooks AN, Göke J, Rätsch G, Schwarz RF, Stegle O, Zhang Z; PCAWG Consortium. PCAWG Transcriptome Core Group, et al. Among authors: brooks an. Nature. 2020 Feb;578(7793):129-136. doi: 10.1038/s41586-020-1970-0. Epub 2020 Feb 5. Nature. 2020. PMID: 32025019 Free PMC article.

6

Full-length transcript characterization of SF3B1 mutation in chronic lymphocytic leukemia reveals downregulation of retained introns.

Tang AD, Soulette CM, van Baren MJ, Hart K, Hrabeta-Robinson E, Wu CJ, Brooks AN. Tang AD, et al. Among authors: brooks an. Nat Commun. 2020 Mar 18;11(1):1438. doi: 10.1038/s41467-020-15171-6. Nat Commun. 2020. PMID: 32188845 Free PMC article.

7

SRSF1 governs progenitor-specific alternative splicing to maintain adult epithelial tissue homeostasis and renewal.

Yu T, Cazares O, Tang AD, Kim HY, Wald T, Verma A, Liu Q, Barcellos-Hoff MH, Floor SN, Jung HS, Brooks AN, Klein OD. Yu T, et al. Among authors: brooks an. Dev Cell. 2022 Mar 14;57(5):624-637.e4. doi: 10.1016/j.devcel.2022.01.011. Epub 2022 Feb 23. Dev Cell. 2022. PMID: 35202586 Free PMC article.

8

Full-length transcript alterations in human bronchial epithelial cells with U2AF1 S34F mutations.

Soulette CM, Hrabeta-Robinson E, Arevalo C, Felton C, Tang AD, Marin MG, Brooks AN. Soulette CM, et al. Among authors: brooks an. Life Sci Alliance. 2023 Jul 24;6(10):e202000641. doi: 10.26508/lsa.202000641. Print 2023 Oct. Life Sci Alliance. 2023. PMID: 37487637 Free PMC article.

9

Conservation of an RNA regulatory map between Drosophila and mammals.

Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit S, Brenner SE, Graveley BR. Brooks AN, et al. Genome Res. 2011 Feb;21(2):193-202. doi: 10.1101/gr.108662.110. Epub 2010 Oct 4. Genome Res. 2011. PMID: 20921232 Free PMC article.

10

Identification and experimental validation of splicing regulatory elements in Drosophila melanogaster reveals functionally conserved splicing enhancers in metazoans.

Brooks AN, Aspden JL, Podgornaia AI, Rio DC, Brenner SE. Brooks AN, et al. RNA. 2011 Oct;17(10):1884-94. doi: 10.1261/rna.2696311. Epub 2011 Aug 24. RNA. 2011. PMID: 21865603 Free PMC article.

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