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Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries.
Munk P, Knudsen BE, Lukjancenko O, Duarte ASR, Van Gompel L, Luiken REC, Smit LAM, Schmitt H, Garcia AD, Hansen RB, Petersen TN, Bossers A, Ruppé E; EFFORT Group; Lund O, Hald T, Pamp SJ, Vigre H, Heederik D, Wagenaar JA, Mevius D, Aarestrup FM. Munk P, et al. Among authors: ruppe e. Nat Microbiol. 2018 Aug;3(8):898-908. doi: 10.1038/s41564-018-0192-9. Epub 2018 Jul 23. Nat Microbiol. 2018. PMID: 30038308
Novel scores relevant to antimicrobial resistance and hospital-acquired infections developed with data from a multi-hospital consortium in the Parisian region of France.
Amarsy R, Granger B, Fournier S, Monteil C, Trystram D, Siorat V, Jarlier V, Robert J; Members of the Collégiale de Bactériologue – Virologie – Hygiène. Amarsy R, et al. J Hosp Infect. 2024 Jan;143:97-104. doi: 10.1016/j.jhin.2023.09.022. Epub 2023 Oct 28. J Hosp Infect. 2024. PMID: 37898407 Free article.
Author Correction: Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries.
Munk P, Knudsen BE, Lukjancenko O, Duarte ASR, Van Gompel L, Luiken REC, Smit LAM, Schmitt H, Garcia AD, Hansen RB, Petersen TN, Bossers A, Ruppé E, Lund O, Hald T, Pamp SJ, Vigre H, Heederik D, Wagenaar JA, Mevius D, Aarestrup FM; EFFORT Group. Munk P, et al. Among authors: ruppe e. Nat Microbiol. 2018 Oct;3(10):1186. doi: 10.1038/s41564-018-0241-4. Nat Microbiol. 2018. PMID: 30131524
Prediction of the intestinal resistome by a three-dimensional structure-based method.
Ruppé E, Ghozlane A, Tap J, Pons N, Alvarez AS, Maziers N, Cuesta T, Hernando-Amado S, Clares I, Martínez JL, Coque TM, Baquero F, Lanza VF, Máiz L, Goulenok T, de Lastours V, Amor N, Fantin B, Wieder I, Andremont A, van Schaik W, Rogers M, Zhang X, Willems RJL, de Brevern AG, Batto JM, Blottière HM, Léonard P, Léjard V, Letur A, Levenez F, Weiszer K, Haimet F, Doré J, Kennedy SP, Ehrlich SD. Ruppé E, et al. Nat Microbiol. 2019 Jan;4(1):112-123. doi: 10.1038/s41564-018-0292-6. Epub 2018 Nov 26. Nat Microbiol. 2019. PMID: 30478291
ResFinder 4.0 for predictions of phenotypes from genotypes.
Bortolaia V, Kaas RS, Ruppe E, Roberts MC, Schwarz S, Cattoir V, Philippon A, Allesoe RL, Rebelo AR, Florensa AF, Fagelhauer L, Chakraborty T, Neumann B, Werner G, Bender JK, Stingl K, Nguyen M, Coppens J, Xavier BB, Malhotra-Kumar S, Westh H, Pinholt M, Anjum MF, Duggett NA, Kempf I, Nykäsenoja S, Olkkola S, Wieczorek K, Amaro A, Clemente L, Mossong J, Losch S, Ragimbeau C, Lund O, Aarestrup FM. Bortolaia V, et al. Among authors: ruppe e. J Antimicrob Chemother. 2020 Dec 1;75(12):3491-3500. doi: 10.1093/jac/dkaa345. J Antimicrob Chemother. 2020. PMID: 32780112 Free PMC article.
In-depth resistome analysis by targeted metagenomics.
Lanza VF, Baquero F, Martínez JL, Ramos-Ruíz R, González-Zorn B, Andremont A, Sánchez-Valenzuela A, Ehrlich SD, Kennedy S, Ruppé E, van Schaik W, Willems RJ, de la Cruz F, Coque TM. Lanza VF, et al. Among authors: ruppe e. Microbiome. 2018 Jan 15;6(1):11. doi: 10.1186/s40168-017-0387-y. Microbiome. 2018. PMID: 29335005 Free PMC article.
128 results