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Whole-genome analyses resolve early branches in the tree of life of modern birds.
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G. Jarvis ED, et al. Among authors: ryder oa. Science. 2014 Dec 12;346(6215):1320-31. doi: 10.1126/science.1253451. Science. 2014. PMID: 25504713 Free PMC article.
X Chromosome Evolution in Cetartiodactyla.
Proskuryakova AA, Kulemzina AI, Perelman PL, Makunin AI, Larkin DM, Farré M, Kukekova AV, Lynn Johnson J, Lemskaya NA, Beklemisheva VR, Roelke-Parker ME, Bellizzi J, Ryder OA, O'Brien SJ, Graphodatsky AS. Proskuryakova AA, et al. Among authors: ryder oa. Genes (Basel). 2017 Aug 31;8(9):216. doi: 10.3390/genes8090216. Genes (Basel). 2017. PMID: 28858207 Free PMC article.
Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks.
Farré M, Kim J, Proskuryakova AA, Zhang Y, Kulemzina AI, Li Q, Zhou Y, Xiong Y, Johnson JL, Perelman PL, Johnson WE, Warren WC, Kukekova AV, Zhang G, O'Brien SJ, Ryder OA, Graphodatsky AS, Ma J, Lewin HA, Larkin DM. Farré M, et al. Among authors: ryder oa. Genome Res. 2019 Apr;29(4):576-589. doi: 10.1101/gr.239863.118. Epub 2019 Feb 13. Genome Res. 2019. PMID: 30760546 Free PMC article.
Precision nomenclature for the new genomics.
Lewin HA, Graves JAM, Ryder OA, Graphodatsky AS, O'Brien SJ. Lewin HA, et al. Among authors: ryder oa. Gigascience. 2019 Aug 1;8(8):giz086. doi: 10.1093/gigascience/giz086. Gigascience. 2019. PMID: 31437278 Free PMC article.
A draft genome assembly of spotted hyena, Crocuta crocuta.
Yang C, Li F, Xiong Z, Koepfli KP, Ryder O, Perelman P, Li Q, Zhang G. Yang C, et al. Sci Data. 2020 Apr 28;7(1):126. doi: 10.1038/s41597-020-0468-9. Sci Data. 2020. PMID: 32345970 Free PMC article.
Karyotype Evolution in 10 Pinniped Species: Variability of Heterochromatin versus High Conservatism of Euchromatin as Revealed by Comparative Molecular Cytogenetics.
Beklemisheva VR, Perelman PL, Lemskaya NA, Proskuryakova AA, Serdyukova NA, Burkanov VN, Gorshunov MB, Ryder O, Thompson M, Lento G, O'Brien SJ, Graphodatsky AS. Beklemisheva VR, et al. Genes (Basel). 2020 Dec 10;11(12):1485. doi: 10.3390/genes11121485. Genes (Basel). 2020. PMID: 33321928 Free PMC article.
Tissue sampling methods and standards for vertebrate genomics.
Wong PB, Wiley EO, Johnson WE, Ryder OA, O'Brien SJ, Haussler D, Koepfli KP, Houck ML, Perelman P, Mastromonaco G, Bentley AC, Venkatesh B, Zhang YP, Murphy RW; G10KCOS. Wong PB, et al. Among authors: ryder oa. Gigascience. 2012 Jul 12;1(1):8. doi: 10.1186/2047-217X-1-8. Gigascience. 2012. PMID: 23587255 Free PMC article.
224 results