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EviNet: a web platform for network enrichment analysis with flexible definition of gene sets.
Nucleic Acids Res. 2018 Jul 2;46(W1):W163-W170. doi: 10.1093/nar/gky485.
Nucleic Acids Res. 2018.
PMID: 29893885
Free PMC article.
NEArender: an R package for functional interpretation of 'omics' data via network enrichment analysis.
Jeggari A, Alexeyenko A.
Jeggari A, et al.
BMC Bioinformatics. 2017 Mar 23;18(Suppl 5):118. doi: 10.1186/s12859-017-1534-y.
BMC Bioinformatics. 2017.
PMID: 28361684
Free PMC article.
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Prediction of response to anti-cancer drugs becomes robust via network integration of molecular data.
Franco M, Jeggari A, Peuget S, Böttger F, Selivanova G, Alexeyenko A.
Franco M, et al. Among authors: jeggari a.
Sci Rep. 2019 Feb 20;9(1):2379. doi: 10.1038/s41598-019-39019-2.
Sci Rep. 2019.
PMID: 30787419
Free PMC article.
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A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells.
Dias JM, Alekseenko Z, Jeggari A, Boareto M, Vollmer J, Kozhevnikova M, Wang H, Matise MP, Alexeyenko A, Iber D, Ericson J.
Dias JM, et al. Among authors: jeggari a.
Sci Adv. 2020 Sep 16;6(38):eaba8196. doi: 10.1126/sciadv.aba8196. Print 2020 Sep.
Sci Adv. 2020.
PMID: 32938678
Free PMC article.
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Robust derivation of transplantable dopamine neurons from human pluripotent stem cells by timed retinoic acid delivery.
Alekseenko Z, Dias JM, Adler AF, Kozhevnikova M, van Lunteren JA, Nolbrant S, Jeggari A, Vasylovska S, Yoshitake T, Kehr J, Carlén M, Alexeyenko A, Parmar M, Ericson J.
Alekseenko Z, et al. Among authors: jeggari a.
Nat Commun. 2022 Jun 1;13(1):3046. doi: 10.1038/s41467-022-30777-8.
Nat Commun. 2022.
PMID: 35650213
Free PMC article.
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miRcode: a map of putative microRNA target sites in the long non-coding transcriptome.
Jeggari A, Marks DS, Larsson E.
Jeggari A, et al.
Bioinformatics. 2012 Aug 1;28(15):2062-3. doi: 10.1093/bioinformatics/bts344. Epub 2012 Jun 19.
Bioinformatics. 2012.
PMID: 22718787
Free PMC article.
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Sensitive Detection of Cell-Free Tumour DNA Using Optimised Targeted Sequencing Can Predict Prognosis in Gastro-Oesophageal Cancer.
Wallander K, Haider Z, Jeggari A, Foroughi-Asl H, Gellerbring A, Lyander A, Chozhan A, Cuba Gyllensten O, Hägglund M, Wirta V, Nordenskjöld M, Lindblad M, Tham E.
Wallander K, et al. Among authors: jeggari a.
Cancers (Basel). 2023 Feb 11;15(4):1160. doi: 10.3390/cancers15041160.
Cancers (Basel). 2023.
PMID: 36831507
Free PMC article.
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Whole-genome informed circulating tumor DNA analysis by multiplex digital PCR for disease monitoring in B-cell lymphomas: a proof-of-concept study.
Haider Z, Wästerlid T, Spångberg LD, Rabbani L, Jylhä C, Thorvaldsdottir B, Skaftason A, Awier HN, Krstic A, Gellerbring A, Lyander A, Hägglund M, Jeggari A, Rassidakis G, Sonnevi K, Sander B, Rosenquist R, Tham E, Smedby KE.
Haider Z, et al. Among authors: jeggari a.
Front Oncol. 2023 Jun 2;13:1176698. doi: 10.3389/fonc.2023.1176698. eCollection 2023.
Front Oncol. 2023.
PMID: 37333831
Free PMC article.
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