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Transient DNMT1 suppression reveals hidden heritable marks in the genome.
McGraw S, Zhang JX, Farag M, Chan D, Caron M, Konermann C, Oakes CC, Mohan KN, Plass C, Pastinen T, Bourque G, Chaillet JR, Trasler JM. McGraw S, et al. Among authors: bourque g. Nucleic Acids Res. 2015 Feb 18;43(3):1485-97. doi: 10.1093/nar/gku1386. Epub 2015 Jan 10. Nucleic Acids Res. 2015. PMID: 25578964 Free PMC article.
The epiGenomic Efficient Correlator (epiGeEC) tool allows fast comparison of user datasets with thousands of public epigenomic datasets.
Laperle J, Hébert-Deschamps S, Raby J, de Lima Morais DA, Barrette M, Bujold D, Bastin C, Robert MA, Nadeau JF, Harel M, Nordell-Markovits A, Veilleux A, Bourque G, Jacques PÉ. Laperle J, et al. Among authors: bourque g. Bioinformatics. 2019 Feb 15;35(4):674-676. doi: 10.1093/bioinformatics/bty655. Bioinformatics. 2019. PMID: 30052804 Free PMC article.
GenPipes: an open-source framework for distributed and scalable genomic analyses.
Bourgey M, Dali R, Eveleigh R, Chen KC, Letourneau L, Fillon J, Michaud M, Caron M, Sandoval J, Lefebvre F, Leveque G, Mercier E, Bujold D, Marquis P, Van PT, Anderson de Lima Morais D, Tremblay J, Shao X, Henrion E, Gonzalez E, Quirion PO, Caron B, Bourque G. Bourgey M, et al. Among authors: bourque g. Gigascience. 2019 Jun 1;8(6):giz037. doi: 10.1093/gigascience/giz037. Gigascience. 2019. PMID: 31185495 Free PMC article.
Pathway and network analysis of more than 2500 whole cancer genomes.
Reyna MA, Haan D, Paczkowska M, Verbeke LPC, Vazquez M, Kahraman A, Pulido-Tamayo S, Barenboim J, Wadi L, Dhingra P, Shrestha R, Getz G, Lawrence MS, Pedersen JS, Rubin MA, Wheeler DA, Brunak S, Izarzugaza JMG, Khurana E, Marchal K, von Mering C, Sahinalp SC, Valencia A; PCAWG Drivers and Functional Interpretation Working Group; Reimand J, Stuart JM, Raphael BJ; PCAWG Consortium. Reyna MA, et al. Nat Commun. 2020 Feb 5;11(1):729. doi: 10.1038/s41467-020-14367-0. Nat Commun. 2020. PMID: 32024854 Free PMC article.
234 results