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The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data.
Perroud PF, Haas FB, Hiss M, Ullrich KK, Alboresi A, Amirebrahimi M, Barry K, Bassi R, Bonhomme S, Chen H, Coates JC, Fujita T, Guyon-Debast A, Lang D, Lin J, Lipzen A, Nogué F, Oliver MJ, Ponce de León I, Quatrano RS, Rameau C, Reiss B, Reski R, Ricca M, Saidi Y, Sun N, Szövényi P, Sreedasyam A, Grimwood J, Stacey G, Schmutz J, Rensing SA. Perroud PF, et al. Among authors: lipzen a. Plant J. 2018 Jul;95(1):168-182. doi: 10.1111/tpj.13940. Epub 2018 Jun 7. Plant J. 2018. PMID: 29681058 Free article.
Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential.
Hurley JM, Dasgupta A, Emerson JM, Zhou X, Ringelberg CS, Knabe N, Lipzen AM, Lindquist EA, Daum CG, Barry KW, Grigoriev IV, Smith KM, Galagan JE, Bell-Pedersen D, Freitag M, Cheng C, Loros JJ, Dunlap JC. Hurley JM, et al. Among authors: lipzen am. Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):16995-7002. doi: 10.1073/pnas.1418963111. Epub 2014 Oct 31. Proc Natl Acad Sci U S A. 2014. PMID: 25362047 Free PMC article.
Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea.
Muraguchi H, Umezawa K, Niikura M, Yoshida M, Kozaki T, Ishii K, Sakai K, Shimizu M, Nakahori K, Sakamoto Y, Choi C, Ngan CY, Lindquist E, Lipzen A, Tritt A, Haridas S, Barry K, Grigoriev IV, Pukkila PJ. Muraguchi H, et al. Among authors: lipzen a. PLoS One. 2015 Oct 28;10(10):e0141586. doi: 10.1371/journal.pone.0141586. eCollection 2015. PLoS One. 2015. PMID: 26510163 Free PMC article.
The genome of Xylona heveae provides a window into fungal endophytism.
Gazis R, Kuo A, Riley R, LaButti K, Lipzen A, Lin J, Amirebrahimi M, Hesse CN, Spatafora JW, Henrissat B, Hainaut M, Grigoriev IV, Hibbett DS. Gazis R, et al. Among authors: lipzen a. Fungal Biol. 2016 Jan;120(1):26-42. doi: 10.1016/j.funbio.2015.10.002. Epub 2015 Oct 22. Fungal Biol. 2016. PMID: 26693682
Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.
Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM,… See abstract for full author list ➔ Bowman JL, et al. Among authors: lipzen am. Cell. 2017 Oct 5;171(2):287-304.e15. doi: 10.1016/j.cell.2017.09.030. Cell. 2017. PMID: 28985561 Free article.
Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria.
Sipos G, Prasanna AN, Walter MC, O'Connor E, Bálint B, Krizsán K, Kiss B, Hess J, Varga T, Slot J, Riley R, Bóka B, Rigling D, Barry K, Lee J, Mihaltcheva S, LaButti K, Lipzen A, Waldron R, Moloney NM, Sperisen C, Kredics L, Vágvölgyi C, Patrignani A, Fitzpatrick D, Nagy I, Doyle S, Anderson JB, Grigoriev IV, Güldener U, Münsterkötter M, Nagy LG. Sipos G, et al. Among authors: lipzen a. Nat Ecol Evol. 2017 Dec;1(12):1931-1941. doi: 10.1038/s41559-017-0347-8. Epub 2017 Oct 30. Nat Ecol Evol. 2017. PMID: 29085064 Free article.
211 results