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COZOID: contact zone identifier for visual analysis of protein-protein interactions.
BMC Bioinformatics. 2018 Apr 6;19(1):125. doi: 10.1186/s12859-018-2113-6.
BMC Bioinformatics. 2018.
PMID: 29625561
Free PMC article.
Interactive exploration of ligand transportation through protein tunnels.
Furmanová K, Jarešová M, Byška J, Jurčík A, Parulek J, Hauser H, Kozlíková B.
Furmanová K, et al.
BMC Bioinformatics. 2017 Feb 15;18(Suppl 2):22. doi: 10.1186/s12859-016-1448-0.
BMC Bioinformatics. 2017.
PMID: 28251878
Free PMC article.
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CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories.
Jurcik A, Bednar D, Byska J, Marques SM, Furmanova K, Daniel L, Kokkonen P, Brezovsky J, Strnad O, Stourac J, Pavelka A, Manak M, Damborsky J, Kozlikova B.
Jurcik A, et al. Among authors: furmanova k.
Bioinformatics. 2018 Oct 15;34(20):3586-3588. doi: 10.1093/bioinformatics/bty386.
Bioinformatics. 2018.
PMID: 29741570
Free PMC article.
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Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes.
Furmanova K, Jurcik A, Kozlikova B, Hauser H, Byska J.
Furmanova K, et al.
IEEE Trans Vis Comput Graph. 2020 Jan;26(1):843-852. doi: 10.1109/TVCG.2019.2934333. Epub 2019 Aug 19.
IEEE Trans Vis Comput Graph. 2020.
PMID: 31425101
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Visual Analysis of Protein-Protein Interaction Docking Models Using COZOID Tool.
Byska J, Jurcik A, Furmanova K, Kozlikova B, Palecek JJ.
Byska J, et al. Among authors: furmanova k.
Methods Mol Biol. 2020;2074:81-94. doi: 10.1007/978-1-4939-9873-9_7.
Methods Mol Biol. 2020.
PMID: 31583632
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LoopGrafter: Visual Support for the Grafting Workflow of Protein Loops.
Opaleny F, Ulbrich P, Planas-Iglesias J, Byska J, Pinto GP, Bednar D, FurmanovA K, KozlikovA B.
Opaleny F, et al. Among authors: furmanova k.
IEEE Trans Vis Comput Graph. 2021 Sep 29;PP. doi: 10.1109/TVCG.2021.3114755. Online ahead of print.
IEEE Trans Vis Comput Graph. 2021.
PMID: 34587016
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sMolBoxes: Dataflow Model for Molecular Dynamics Exploration.
Ulbrich P, Waldner M, Furmanova K, Marques SM, Bednar D, Kozlikova B, Byska J.
Ulbrich P, et al. Among authors: furmanova k.
IEEE Trans Vis Comput Graph. 2023 Jan;29(1):581-590. doi: 10.1109/TVCG.2022.3209411. Epub 2022 Dec 16.
IEEE Trans Vis Comput Graph. 2023.
PMID: 36155456
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Seeing the unseen: Comparison study of representation approaches for biochemical processes in education.
Pokojná H, Kozlíková B, Berry D, Kriglstein S, Furmanová K.
Pokojná H, et al. Among authors: furmanova k.
PLoS One. 2023 Nov 6;18(11):e0293592. doi: 10.1371/journal.pone.0293592. eCollection 2023.
PLoS One. 2023.
PMID: 37930950
Free PMC article.
Review.
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