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Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive.
Hering D, Borja A, Jones JI, Pont D, Boets P, Bouchez A, Bruce K, Drakare S, Hänfling B, Kahlert M, Leese F, Meissner K, Mergen P, Reyjol Y, Segurado P, Vogler A, Kelly M. Hering D, et al. Among authors: leese f. Water Res. 2018 Jul 1;138:192-205. doi: 10.1016/j.watres.2018.03.003. Epub 2018 Mar 20. Water Res. 2018. PMID: 29602086 Free article. Review.
The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems.
Pawlowski J, Kelly-Quinn M, Altermatt F, Apothéloz-Perret-Gentil L, Beja P, Boggero A, Borja A, Bouchez A, Cordier T, Domaizon I, Feio MJ, Filipe AF, Fornaroli R, Graf W, Herder J, van der Hoorn B, Iwan Jones J, Sagova-Mareckova M, Moritz C, Barquín J, Piggott JJ, Pinna M, Rimet F, Rinkevich B, Sousa-Santos C, Specchia V, Trobajo R, Vasselon V, Vitecek S, Zimmerman J, Weigand A, Leese F, Kahlert M. Pawlowski J, et al. Among authors: leese f. Sci Total Environ. 2018 Oct 1;637-638:1295-1310. doi: 10.1016/j.scitotenv.2018.05.002. Epub 2018 May 22. Sci Total Environ. 2018. PMID: 29801222 Free article. Review.
DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work.
Weigand H, Beermann AJ, Čiampor F, Costa FO, Csabai Z, Duarte S, Geiger MF, Grabowski M, Rimet F, Rulik B, Strand M, Szucsich N, Weigand AM, Willassen E, Wyler SA, Bouchez A, Borja A, Čiamporová-Zaťovičová Z, Ferreira S, Dijkstra KB, Eisendle U, Freyhof J, Gadawski P, Graf W, Haegerbaeumer A, van der Hoorn BB, Japoshvili B, Keresztes L, Keskin E, Leese F, Macher JN, Mamos T, Paz G, Pešić V, Pfannkuchen DM, Pfannkuchen MA, Price BW, Rinkevich B, Teixeira MAL, Várbíró G, Ekrem T. Weigand H, et al. Among authors: leese f. Sci Total Environ. 2019 Aug 15;678:499-524. doi: 10.1016/j.scitotenv.2019.04.247. Epub 2019 Apr 27. Sci Total Environ. 2019. PMID: 31077928 Free article. Review.
Ecosystems monitoring powered by environmental genomics: A review of current strategies with an implementation roadmap.
Cordier T, Alonso-Sáez L, Apothéloz-Perret-Gentil L, Aylagas E, Bohan DA, Bouchez A, Chariton A, Creer S, Frühe L, Keck F, Keeley N, Laroche O, Leese F, Pochon X, Stoeck T, Pawlowski J, Lanzén A. Cordier T, et al. Among authors: leese f. Mol Ecol. 2021 Jul;30(13):2937-2958. doi: 10.1111/mec.15472. Epub 2020 Jun 18. Mol Ecol. 2021. PMID: 32416615 Free PMC article. Review.
Morphological vs. DNA metabarcoding approaches for the evaluation of stream ecological status with benthic invertebrates: Testing different combinations of markers and strategies of data filtering.
Meyer A, Boyer F, Valentini A, Bonin A, Ficetola GF, Beisel JN, Bouquerel J, Wagner P, Gaboriaud C, Leese F, Dejean T, Taberlet P, Usseglio-Polatera P. Meyer A, et al. Among authors: leese f. Mol Ecol. 2021 Jul;30(13):3203-3220. doi: 10.1111/mec.15723. Epub 2020 Nov 23. Mol Ecol. 2021. PMID: 33150613 Free article.
Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring.
Sagova-Mareckova M, Boenigk J, Bouchez A, Cermakova K, Chonova T, Cordier T, Eisendle U, Elersek T, Fazi S, Fleituch T, Frühe L, Gajdosova M, Graupner N, Haegerbaeumer A, Kelly AM, Kopecky J, Leese F, Nõges P, Orlic S, Panksep K, Pawlowski J, Petrusek A, Piggott JJ, Rusch JC, Salis R, Schenk J, Simek K, Stovicek A, Strand DA, Vasquez MI, Vrålstad T, Zlatkovic S, Zupancic M, Stoeck T. Sagova-Mareckova M, et al. Among authors: leese f. Water Res. 2021 Mar 1;191:116767. doi: 10.1016/j.watres.2020.116767. Epub 2020 Dec 23. Water Res. 2021. PMID: 33418487 Free article. Review.
Deep learning and computer vision will transform entomology.
Høye TT, Ärje J, Bjerge K, Hansen OLP, Iosifidis A, Leese F, Mann HMR, Meissner K, Melvad C, Raitoharju J. Høye TT, et al. Among authors: leese f. Proc Natl Acad Sci U S A. 2021 Jan 12;118(2):e2002545117. doi: 10.1073/pnas.2002545117. Proc Natl Acad Sci U S A. 2021. PMID: 33431561 Free PMC article.
Connecting high-throughput biodiversity inventories: Opportunities for a site-based genomic framework for global integration and synthesis.
Arribas P, Andújar C, Bidartondo MI, Bohmann K, Coissac É, Creer S, deWaard JR, Elbrecht V, Ficetola GF, Goberna M, Kennedy S, Krehenwinkel H, Leese F, Novotny V, Ronquist F, Yu DW, Zinger L, Creedy TJ, Meramveliotakis E, Noguerales V, Overcast I, Morlon H, Vogler AP, Papadopoulou A, Emerson BC. Arribas P, et al. Among authors: leese f. Mol Ecol. 2021 Mar;30(5):1120-1135. doi: 10.1111/mec.15797. Epub 2021 Feb 2. Mol Ecol. 2021. PMID: 33432777 Free PMC article. Review.
81 results