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Squeezing water from a stone: high-throughput sequencing from a 145-year old holotype resolves (barely) a cryptic species problem in flying lizards.
McGuire JA, Cotoras DD, O'Connell B, Lawalata SZS, Wang-Claypool CY, Stubbs A, Huang X, Wogan GOU, Hykin SM, Reilly SB, Bi K, Riyanto A, Arida E, Smith LL, Milne H, Streicher JW, Iskandar DT. McGuire JA, et al. PeerJ. 2018 Mar 20;6:e4470. doi: 10.7717/peerj.4470. eCollection 2018. PeerJ. 2018. PMID: 29576952 Free PMC article.
Puma genomes from North and South America provide insights into the genomic consequences of inbreeding.
Saremi NF, Supple MA, Byrne A, Cahill JA, Coutinho LL, Dalén L, Figueiró HV, Johnson WE, Milne HJ, O'Brien SJ, O'Connell B, Onorato DP, Riley SPD, Sikich JA, Stahler DR, Villela PMS, Vollmers C, Wayne RK, Eizirik E, Corbett-Detig RB, Green RE, Wilmers CC, Shapiro B. Saremi NF, et al. Nat Commun. 2019 Oct 18;10(1):4769. doi: 10.1038/s41467-019-12741-1. Nat Commun. 2019. PMID: 31628318 Free PMC article.
Author Correction: Puma genomes from North and South America provide insights into the genomic consequences of inbreeding.
Saremi NF, Supple MA, Byrne A, Cahill JA, Coutinho LL, Dalén L, Figueiró HV, Johnson WE, Milne HJ, O'Brien SJ, O'Connell B, Onorato DP, Riley SPD, Sikich JA, Stahler DR, Villela PMS, Vollmers C, Wayne RK, Eizirik E, Corbett-Detig RB, Green RE, Wilmers CC, Shapiro B. Saremi NF, et al. Nat Commun. 2019 Nov 21;10(1):5276. doi: 10.1038/s41467-019-13096-3. Nat Commun. 2019. PMID: 31754100 Free PMC article.
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage.
Putnam NH, O'Connell BL, Stites JC, Rice BJ, Blanchette M, Calef R, Troll CJ, Fields A, Hartley PD, Sugnet CW, Haussler D, Rokhsar DS, Green RE. Putnam NH, et al. Genome Res. 2016 Mar;26(3):342-50. doi: 10.1101/gr.193474.115. Epub 2016 Feb 4. Genome Res. 2016. PMID: 26848124 Free PMC article.
Natural selection shaped the rise and fall of passenger pigeon genomic diversity.
Murray GGR, Soares AER, Novak BJ, Schaefer NK, Cahill JA, Baker AJ, Demboski JR, Doll A, Da Fonseca RR, Fulton TL, Gilbert MTP, Heintzman PD, Letts B, McIntosh G, O'Connell BL, Peck M, Pipes ML, Rice ES, Santos KM, Sohrweide AG, Vohr SH, Corbett-Detig RB, Green RE, Shapiro B. Murray GGR, et al. Science. 2017 Nov 17;358(6365):951-954. doi: 10.1126/science.aao0960. Science. 2017. PMID: 29146814
Improved reference genome for the domestic horse increases assembly contiguity and composition.
Kalbfleisch TS, Rice ES, DePriest MS Jr, Walenz BP, Hestand MS, Vermeesch JR, O Connell BL, Fiddes IT, Vershinina AO, Saremi NF, Petersen JL, Finno CJ, Bellone RR, McCue ME, Brooks SA, Bailey E, Orlando L, Green RE, Miller DC, Antczak DF, MacLeod JN. Kalbfleisch TS, et al. Commun Biol. 2018 Nov 16;1:197. doi: 10.1038/s42003-018-0199-z. eCollection 2018. Commun Biol. 2018. PMID: 30456315 Free PMC article.
Erratum: Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition.
Kalbfleisch TS, Rice ES, DePriest MS Jr, Walenz BP, Hestand MS, Vermeesch JR, O'Connell BL, Fiddes IT, Vershinina AO, Saremi NF, Petersen JL, Finno CJ, Bellone RR, McCue ME, Brooks SA, Bailey E, Orlando L, Green RE, Miller DC, Antczak DF, MacLeod JN. Kalbfleisch TS, et al. Commun Biol. 2019 Sep 11;2:342. doi: 10.1038/s42003-019-0591-3. eCollection 2019. Commun Biol. 2019. PMID: 31531403 Free PMC article.
Deeply conserved synteny resolves early events in vertebrate evolution.
Simakov O, Marlétaz F, Yue JX, O'Connell B, Jenkins J, Brandt A, Calef R, Tung CH, Huang TK, Schmutz J, Satoh N, Yu JK, Putnam NH, Green RE, Rokhsar DS. Simakov O, et al. Nat Ecol Evol. 2020 Jun;4(6):820-830. doi: 10.1038/s41559-020-1156-z. Epub 2020 Apr 20. Nat Ecol Evol. 2020. PMID: 32313176 Free PMC article.
621 results