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The comprehensive updated regulatory network of Escherichia coli K-12.
Salgado H, Santos-Zavaleta A, Gama-Castro S, Peralta-Gil M, Peñaloza-Spínola MI, Martínez-Antonio A, Karp PD, Collado-Vides J. Salgado H, et al. Among authors: karp pd. BMC Bioinformatics. 2006 Jan 6;7:5. doi: 10.1186/1471-2105-7-5. BMC Bioinformatics. 2006. PMID: 16398937 Free PMC article.
BioWarehouse: a bioinformatics database warehouse toolkit.
Lee TJ, Pouliot Y, Wagner V, Gupta P, Stringer-Calvert DW, Tenenbaum JD, Karp PD. Lee TJ, et al. Among authors: karp pd. BMC Bioinformatics. 2006 Mar 23;7:170. doi: 10.1186/1471-2105-7-170. BMC Bioinformatics. 2006. PMID: 16556315 Free PMC article.
A survey of orphan enzyme activities.
Pouliot Y, Karp PD. Pouliot Y, et al. Among authors: karp pd. BMC Bioinformatics. 2007 Jul 10;8:244. doi: 10.1186/1471-2105-8-244. BMC Bioinformatics. 2007. PMID: 17623104 Free PMC article.
Multidimensional annotation of the Escherichia coli K-12 genome.
Karp PD, Keseler IM, Shearer A, Latendresse M, Krummenacker M, Paley SM, Paulsen I, Collado-Vides J, Gama-Castro S, Peralta-Gil M, Santos-Zavaleta A, Peñaloza-Spínola MI, Bonavides-Martinez C, Ingraham J. Karp PD, et al. Nucleic Acids Res. 2007;35(22):7577-90. doi: 10.1093/nar/gkm740. Epub 2007 Oct 16. Nucleic Acids Res. 2007. PMID: 17940092 Free PMC article.
Annotation-based inference of transporter function.
Lee TJ, Paulsen I, Karp P. Lee TJ, et al. Bioinformatics. 2008 Jul 1;24(13):i259-67. doi: 10.1093/bioinformatics/btn180. Bioinformatics. 2008. PMID: 18586723 Free PMC article.
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, Kaipa P, Karthikeyan AS, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Paley S, Popescu L, Pujar A, Shearer AG, Zhang P, Karp PD. Caspi R, et al. Among authors: karp pd. Nucleic Acids Res. 2010 Jan;38(Database issue):D473-9. doi: 10.1093/nar/gkp875. Epub 2009 Oct 22. Nucleic Acids Res. 2010. PMID: 19850718 Free PMC article.
149 results