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findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies.
Sun H, Ding J, Piednoël M, Schneeberger K. Sun H, et al. Among authors: schneeberger k. Bioinformatics. 2018 Feb 15;34(4):550-557. doi: 10.1093/bioinformatics/btx637. Bioinformatics. 2018. PMID: 29444236
MOTIVATION: Analyzing k-mer frequencies in whole-genome sequencing data is becoming a common method for estimating genome size (GS). ...RESULTS: We present findGSE, which fits skew normal distributions to k-mer frequencies to estimate GS. findGSE outperformed existi …
MOTIVATION: Analyzing k-mer frequencies in whole-genome sequencing data is becoming a common method for estimating genome size (GS). …
Optimal spliced alignments of short sequence reads.
De Bona F, Ossowski S, Schneeberger K, Rätsch G. De Bona F, et al. Among authors: schneeberger k. Bioinformatics. 2008 Aug 15;24(16):i174-80. doi: 10.1093/bioinformatics/btn300. Bioinformatics. 2008. PMID: 18689821 Free article.
Sequencing of natural strains of Arabidopsis thaliana with short reads.
Ossowski S, Schneeberger K, Clark RM, Lanz C, Warthmann N, Weigel D. Ossowski S, et al. Among authors: schneeberger k. Genome Res. 2008 Dec;18(12):2024-33. doi: 10.1101/gr.080200.108. Epub 2008 Sep 25. Genome Res. 2008. PMID: 18818371 Free PMC article.
Reference-guided assembly of four diverse Arabidopsis thaliana genomes.
Schneeberger K, Ossowski S, Ott F, Klein JD, Wang X, Lanz C, Smith LM, Cao J, Fitz J, Warthmann N, Henz SR, Huson DH, Weigel D. Schneeberger K, et al. Proc Natl Acad Sci U S A. 2011 Jun 21;108(25):10249-54. doi: 10.1073/pnas.1107739108. Epub 2011 Jun 6. Proc Natl Acad Sci U S A. 2011. PMID: 21646520 Free PMC article.
Whole-genome sequencing of multiple Arabidopsis thaliana populations.
Cao J, Schneeberger K, Ossowski S, Günther T, Bender S, Fitz J, Koenig D, Lanz C, Stegle O, Lippert C, Wang X, Ott F, Müller J, Alonso-Blanco C, Borgwardt K, Schmid KJ, Weigel D. Cao J, et al. Among authors: schneeberger k. Nat Genet. 2011 Aug 28;43(10):956-63. doi: 10.1038/ng.911. Nat Genet. 2011. PMID: 21874002
The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana.
Wijnker E, Velikkakam James G, Ding J, Becker F, Klasen JR, Rawat V, Rowan BA, de Jong DF, de Snoo CB, Zapata L, Huettel B, de Jong H, Ossowski S, Weigel D, Koornneef M, Keurentjes JJ, Schneeberger K. Wijnker E, et al. Among authors: schneeberger k. Elife. 2013 Dec 17;2:e01426. doi: 10.7554/eLife.01426. Elife. 2013. PMID: 24347547 Free PMC article.
Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage.
Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D. Hagmann J, et al. Among authors: schneeberger k. PLoS Genet. 2015 Jan 8;11(1):e1004920. doi: 10.1371/journal.pgen.1004920. eCollection 2015 Jan. PLoS Genet. 2015. PMID: 25569172 Free PMC article.
140 results