Roddy AC - Search Results

1

Prospective patient stratification into robust cancer-cell intrinsic subtypes from colorectal cancer biopsies.

Alderdice M, Richman SD, Gollins S, Stewart JP, Hurt C, Adams R, McCorry AM, Roddy AC, Vimalachandran D, Isella C, Medico E, Maughan T, McArt DG, Lawler M, Dunne PD. Alderdice M, et al. Among authors: roddy ac. J Pathol. 2018 May;245(1):19-28. doi: 10.1002/path.5051. Epub 2018 Mar 25. J Pathol. 2018. PMID: 29412457 Free PMC article.

2

Cancer-cell intrinsic gene expression signatures overcome intratumoural heterogeneity bias in colorectal cancer patient classification.

Dunne PD, Alderdice M, O'Reilly PG, Roddy AC, McCorry AMB, Richman S, Maughan T, McDade SS, Johnston PG, Longley DB, Kay E, McArt DG, Lawler M. Dunne PD, et al. Among authors: roddy ac. Nat Commun. 2017 May 31;8:15657. doi: 10.1038/ncomms15657. Nat Commun. 2017. PMID: 28561046 Free PMC article.

3

Impact of Variable RNA-Sequencing Depth on Gene Expression Signatures and Target Compound Robustness: Case Study Examining Brain Tumor (Glioma) Disease Progression.

Stupnikov A, O'Reilly PG, McInerney CE, Roddy AC, Dunne PD, Gilmore A, Ellis HP, Flannery T, Healy E, McIntosh SA, Savage K, Kurian KM, Emmert-Streib F, Prise KM, Salto-Tellez M, McArt DG. Stupnikov A, et al. Among authors: roddy ac. JCO Precis Oncol. 2018 Sep 13;2:PO.18.00014. doi: 10.1200/PO.18.00014. JCO Precis Oncol. 2018. PMID: 30324181 Free PMC article.

4

ACE: A Workbench Using Evolutionary Genetic Algorithms for Analyzing Association in TCGA.

Gilmore AR, Alderdice M, Savage KI, O'Reilly PG, Roddy AC, Dunne PD, Lawler M, McDade SS, Waugh DJ, McArt DG. Gilmore AR, et al. Among authors: roddy ac. Cancer Res. 2019 Apr 15;79(8):2072-2075. doi: 10.1158/0008-5472.CAN-18-1976. Epub 2019 Feb 13. Cancer Res. 2019. PMID: 30760519

5

NUQA: Estimating Cancer Spatial and Temporal Heterogeneity and Evolution through Alignment-Free Methods.

Roddy AC, Jurek-Loughrey A, Souza J, Gilmore A, O'Reilly PG, Stupnikov A, Gonzalez de Castro D, Prise KM, Salto-Tellez M, McArt DG. Roddy AC, et al. Mol Biol Evol. 2019 Dec 1;36(12):2883-2889. doi: 10.1093/molbev/msz182. Mol Biol Evol. 2019. PMID: 31424551 Free PMC article.

6

Defining the molecular evolution of extrauterine high grade serous carcinoma.

Beirne JP, McArt DG, Roddy A, McDermott C, Ferris J, Buckley NE, Coulter P, McCabe N, Eddie SL, Dunne PD, O'Reilly P, Gilmore A, Feeney L, Ewing DL, Drapkin RI, Salto-Tellez M, Kennedy RD, Harley IJG, McCluggage WG, Mullan PB. Beirne JP, et al. Gynecol Oncol. 2019 Nov;155(2):305-317. doi: 10.1016/j.ygyno.2019.08.029. Epub 2019 Sep 4. Gynecol Oncol. 2019. PMID: 31493898

7

Prostate cancer heterogeneity assessment with multi-regional sampling and alignment-free methods.

Murphy RG, Roddy AC, Srivastava S, Baena E, Waugh DJ, M O'Sullivan J, McArt DG, Jain S, LaBonte MJ. Murphy RG, et al. Among authors: roddy ac. NAR Genom Bioinform. 2020 Sep;2(3):lqaa062. doi: 10.1093/nargab/lqaa062. Epub 2020 Aug 20. NAR Genom Bioinform. 2020. PMID: 32856020 Free PMC article.

8

A bespoke target selection tool to guide biomarker discovery in tubo-ovarian cancer.

Beirne JP, Gilmore A, McInerney CE, Roddy A, Glenn McCluggage W, Harley IJG, Abdullah Alvi M, Prise KM, McArt DG, Mullan PB. Beirne JP, et al. Comput Struct Biotechnol J. 2022 Jun 17;20:3359-3371. doi: 10.1016/j.csbj.2022.06.016. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 35832628 Free PMC article.

9

Transcriptional Profiling of a Patient-Matched Cohort of Glioblastoma (IDH-Wildtype) for Therapeutic Target and Repurposing Drug Identification.

Roddy AC, McInerney CE, Flannery T, Healy EG, Stewart JP, Spence VJ, Walsh J, Salto-Tellez M, McArt DG, Prise KM. Roddy AC, et al. Biomedicines. 2023 Apr 19;11(4):1219. doi: 10.3390/biomedicines11041219. Biomedicines. 2023. PMID: 37189838 Free PMC article.

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