Song HS - Search Results

1

Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture.

Khan N, Maezato Y, McClure RS, Brislawn CJ, Mobberley JM, Isern N, Chrisler WB, Markillie LM, Barney BM, Song HS, Nelson WC, Bernstein HC. Khan N, et al. Among authors: song hs. Sci Rep. 2018 Jan 10;8(1):297. doi: 10.1038/s41598-017-18630-1. Sci Rep. 2018. PMID: 29321512 Free PMC article.

2

Integrated in silico Analyses of Regulatory and Metabolic Networks of Synechococcus sp. PCC 7002 Reveal Relationships between Gene Centrality and Essentiality.

Song HS, McClure RS, Bernstein HC, Overall CC, Hill EA, Beliaev AS. Song HS, et al. Life (Basel). 2015 Mar 27;5(2):1127-40. doi: 10.3390/life5021127. Life (Basel). 2015. PMID: 25826650 Free PMC article.

3

Engineering microbial consortia for controllable outputs.

Lindemann SR, Bernstein HC, Song HS, Fredrickson JK, Fields MW, Shou W, Johnson DR, Beliaev AS. Lindemann SR, et al. Among authors: song hs. ISME J. 2016 Sep;10(9):2077-84. doi: 10.1038/ismej.2016.26. Epub 2016 Mar 11. ISME J. 2016. PMID: 26967105 Free PMC article.

4

Microbial Community Metabolic Modeling: A Community Data-Driven Network Reconstruction.

Henry CS, Bernstein HC, Weisenhorn P, Taylor RC, Lee JY, Zucker J, Song HS. Henry CS, et al. Among authors: song hs. J Cell Physiol. 2016 Nov;231(11):2339-45. doi: 10.1002/jcp.25428. Epub 2016 Jun 2. J Cell Physiol. 2016. PMID: 27186840 Free PMC article.

5

Trade-offs between microbiome diversity and productivity in a stratified microbial mat.

Bernstein HC, Brislawn C, Renslow RS, Dana K, Morton B, Lindemann SR, Song HS, Atci E, Beyenal H, Fredrickson JK, Jansson JK, Moran JJ. Bernstein HC, et al. Among authors: song hs. ISME J. 2017 Feb;11(2):405-414. doi: 10.1038/ismej.2016.133. Epub 2016 Nov 1. ISME J. 2017. PMID: 27801910 Free PMC article.

6

Species-specific transcriptomic network inference of interspecies interactions.

McClure RS, Overall CC, Hill EA, Song HS, Charania M, Bernstein HC, McDermott JE, Beliaev AS. McClure RS, et al. Among authors: song hs. ISME J. 2018 Aug;12(8):2011-2023. doi: 10.1038/s41396-018-0145-6. Epub 2018 May 24. ISME J. 2018. PMID: 29795448 Free PMC article.

7

Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations.

Roy Chowdhury T, Lee JY, Bottos EM, Brislawn CJ, White RA 3rd, Bramer LM, Brown J, Zucker JD, Kim YM, Jumpponen A, Rice CW, Fansler SJ, Metz TO, McCue LA, Callister SJ, Song HS, Jansson JK. Roy Chowdhury T, et al. Among authors: song hs. mSystems. 2019 Jun 11;4(4):e00061-19. doi: 10.1128/mSystems.00061-19. mSystems. 2019. PMID: 31186334 Free PMC article.

8

Minimal Interspecies Interaction Adjustment (MIIA): Inference of Neighbor-Dependent Interactions in Microbial Communities.

Song HS, Lee JY, Haruta S, Nelson WC, Lee DY, Lindemann SR, Fredrickson JK, Bernstein HC. Song HS, et al. Front Microbiol. 2019 Jun 11;10:1264. doi: 10.3389/fmicb.2019.01264. eCollection 2019. Front Microbiol. 2019. PMID: 31263456 Free PMC article.

9

Prediction of Neighbor-Dependent Microbial Interactions From Limited Population Data.

Lee JY, Haruta S, Kato S, Bernstein HC, Lindemann SR, Lee DY, Fredrickson JK, Song HS. Lee JY, et al. Among authors: song hs. Front Microbiol. 2020 Jan 21;10:3049. doi: 10.3389/fmicb.2019.03049. eCollection 2019. Front Microbiol. 2020. PMID: 32038529 Free PMC article.

10

Integrated network modeling approach defines key metabolic responses of soil microbiomes to perturbations.

McClure RS, Lee JY, Chowdhury TR, Bottos EM, White RA 3rd, Kim YM, Nicora CD, Metz TO, Hofmockel KS, Jansson JK, Song HS. McClure RS, et al. Among authors: song hs. Sci Rep. 2020 Jul 2;10(1):10882. doi: 10.1038/s41598-020-67878-7. Sci Rep. 2020. PMID: 32616808 Free PMC article.

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