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Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity.
Edger PP, VanBuren R, Colle M, Poorten TJ, Wai CM, Niederhuth CE, Alger EI, Ou S, Acharya CB, Wang J, Callow P, McKain MR, Shi J, Collier C, Xiong Z, Mower JP, Slovin JP, Hytönen T, Jiang N, Childs KL, Knapp SJ. Edger PP, et al. Among authors: mckain mr. Gigascience. 2018 Feb 1;7(2):1-7. doi: 10.1093/gigascience/gix124. Gigascience. 2018. PMID: 29253147 Free PMC article.
The pineapple genome and the evolution of CAM photosynthesis.
Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, Ye Z, Miao C, Lin Z, Wang H, Zhou H, Yim WC, Priest HD, Zheng C, Woodhouse M, Edger PP, Guyot R, Guo HB, Guo H, Zheng G, Singh R, Sharma A, Min X, Zheng Y, Lee H, Gurtowski J, Sedlazeck FJ, Harkess A, McKain MR, Liao Z, Fang J, Liu J, Zhang X, Zhang Q, Hu W, Qin Y, Wang K, Chen LY, Shirley N, Lin YR, Liu LY, Hernandez AG, Wright CL, Bulone V, Tuskan GA, Heath K, Zee F, Moore PH, Sunkar R, Leebens-Mack JH, Mockler T, Bennetzen JL, Freeling M, Sankoff D, Paterson AH, Zhu X, Yang X, Smith JA, Cushman JC, Paull RE, Yu Q. Ming R, et al. Among authors: mckain mr. Nat Genet. 2015 Dec;47(12):1435-42. doi: 10.1038/ng.3435. Epub 2015 Nov 2. Nat Genet. 2015. PMID: 26523774 Free PMC article.
Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower.
Edger PP, Smith R, McKain MR, Cooley AM, Vallejo-Marin M, Yuan Y, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs KL, Washburn JD, Schmitz RJ, Smith GD, Pires JC, Puzey JR. Edger PP, et al. Among authors: mckain mr. Plant Cell. 2017 Sep;29(9):2150-2167. doi: 10.1105/tpc.17.00010. Epub 2017 Aug 16. Plant Cell. 2017. PMID: 28814644 Free PMC article.
Origin and evolution of the octoploid strawberry genome.
Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ. Edger PP, et al. Among authors: mckain mr. Nat Genet. 2019 Mar;51(3):541-547. doi: 10.1038/s41588-019-0356-4. Epub 2019 Feb 25. Nat Genet. 2019. PMID: 30804557 Free PMC article.
Author Correction: Origin and evolution of the octoploid strawberry genome.
Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ. Edger PP, et al. Among authors: mckain mr. Nat Genet. 2019 Apr;51(4):765. doi: 10.1038/s41588-019-0380-4. Nat Genet. 2019. PMID: 30842601 Free PMC article.
Reply to: Revisiting the origin of octoploid strawberry.
Edger PP, McKain MR, Yocca AE, Knapp SJ, Qiao Q, Zhang T. Edger PP, et al. Among authors: mckain mr. Nat Genet. 2020 Jan;52(1):5-7. doi: 10.1038/s41588-019-0544-2. Epub 2019 Dec 16. Nat Genet. 2020. PMID: 31844320 Free PMC article. No abstract available.
Phylogeny and multiple independent whole-genome duplication events in the Brassicales.
Mabry ME, Brose JM, Blischak PD, Sutherland B, Dismukes WT, Bottoms CA, Edger PP, Washburn JD, An H, Hall JC, McKain MR, Al-Shehbaz I, Barker MS, Schranz ME, Conant GC, Pires JC. Mabry ME, et al. Among authors: mckain mr. Am J Bot. 2020 Aug;107(8):1148-1164. doi: 10.1002/ajb2.1514. Epub 2020 Aug 24. Am J Bot. 2020. PMID: 32830865 Free PMC article.
52 results