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Quantifying Mesoscale Neuroanatomy Using X-Ray Microtomography.
Dyer EL, Gray Roncal W, Prasad JA, Fernandes HL, Gürsoy D, De Andrade V, Fezzaa K, Xiao X, Vogelstein JT, Jacobsen C, Körding KP, Kasthuri N. Dyer EL, et al. Among authors: vogelstein jt. eNeuro. 2017 Oct 16;4(5):ENEURO.0195-17.2017. doi: 10.1523/ENEURO.0195-17.2017. eCollection 2017 Sep-Oct. eNeuro. 2017. PMID: 29085899 Free PMC article.
Saturated Reconstruction of a Volume of Neocortex.
Kasthuri N, Hayworth KJ, Berger DR, Schalek RL, Conchello JA, Knowles-Barley S, Lee D, Vázquez-Reina A, Kaynig V, Jones TR, Roberts M, Morgan JL, Tapia JC, Seung HS, Roncal WG, Vogelstein JT, Burns R, Sussman DL, Priebe CE, Pfister H, Lichtman JW. Kasthuri N, et al. Among authors: vogelstein jt. Cell. 2015 Jul 30;162(3):648-61. doi: 10.1016/j.cell.2015.06.054. Cell. 2015. PMID: 26232230 Free article.
An automated images-to-graphs framework for high resolution connectomics.
Gray Roncal WR, Kleissas DM, Vogelstein JT, Manavalan P, Lillaney K, Pekala M, Burns R, Vogelstein RJ, Priebe CE, Chevillet MA, Hager GD. Gray Roncal WR, et al. Among authors: vogelstein rj, vogelstein jt. Front Neuroinform. 2015 Aug 13;9:20. doi: 10.3389/fninf.2015.00020. eCollection 2015. Front Neuroinform. 2015. PMID: 26321942 Free PMC article.
A community-developed open-source computational ecosystem for big neuro data.
Vogelstein JT, Perlman E, Falk B, Baden A, Gray Roncal W, Chandrashekhar V, Collman F, Seshamani S, Patsolic JL, Lillaney K, Kazhdan M, Hider R Jr, Pryor D, Matelsky J, Gion T, Manavalan P, Wester B, Chevillet M, Trautman ET, Khairy K, Bridgeford E, Kleissas DM, Tward DJ, Crow AK, Hsueh B, Wright MA, Miller MI, Smith SJ, Vogelstein RJ, Deisseroth K, Burns R. Vogelstein JT, et al. Among authors: vogelstein rj. Nat Methods. 2018 Nov;15(11):846-847. doi: 10.1038/s41592-018-0181-1. Nat Methods. 2018. PMID: 30377345 Free PMC article. No abstract available.
Eliminating accidental deviations to minimize generalization error and maximize replicability: Applications in connectomics and genomics.
Bridgeford EW, Wang S, Wang Z, Xu T, Craddock C, Dey J, Kiar G, Gray-Roncal W, Colantuoni C, Douville C, Noble S, Priebe CE, Caffo B, Milham M, Zuo XN; Consortium for Reliability and Reproducibility; Vogelstein JT. Bridgeford EW, et al. Among authors: vogelstein jt. PLoS Comput Biol. 2021 Sep 16;17(9):e1009279. doi: 10.1371/journal.pcbi.1009279. eCollection 2021 Sep. PLoS Comput Biol. 2021. PMID: 34529652 Free PMC article.
The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience.
Burns R, Roncal WG, Kleissas D, Lillaney K, Manavalan P, Perlman E, Berger DR, Bock DD, Chung K, Grosenick L, Kasthuri N, Weiler NC, Deisseroth K, Kazhdan M, Lichtman J, Reid RC, Smith SJ, Szalay AS, Vogelstein JT, Vogelstein RJ. Burns R, et al. Among authors: vogelstein rj, vogelstein jt. Sci Stat Database Manag. 2013:10.1145/2484838.2484870. doi: 10.1145/2484838.2484870. Sci Stat Database Manag. 2013. PMID: 24401992 Free PMC article.
Magnetic resonance connectome automated pipeline: an overview.
Gray WR, Bogovic JA, Vogelstein JT, Landman BA, Prince JL, Vogelstein RJ. Gray WR, et al. Among authors: vogelstein rj, vogelstein jt. IEEE Pulse. 2012 Mar;3(2):42-8. doi: 10.1109/MPUL.2011.2181023. IEEE Pulse. 2012. PMID: 22481745 Review.
90 results