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SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology.
Petkau A, Mabon P, Sieffert C, Knox NC, Cabral J, Iskander M, Iskander M, Weedmark K, Zaheer R, Katz LS, Nadon C, Reimer A, Taboada E, Beiko RG, Hsiao W, Brinkman F, Graham M, Van Domselaar G. Petkau A, et al. Among authors: taboada e. Microb Genom. 2017 Jun 8;3(6):e000116. doi: 10.1099/mgen.0.000116. eCollection 2017 Jun 30. Microb Genom. 2017. PMID: 29026651 Free PMC article.
The Validation and Implications of Using Whole Genome Sequencing as a Replacement for Traditional Serotyping for a National Salmonella Reference Laboratory.
Yachison CA, Yoshida C, Robertson J, Nash JHE, Kruczkiewicz P, Taboada EN, Walker M, Reimer A, Christianson S, Nichani A; PulseNet Canada Steering Committee; Nadon C. Yachison CA, et al. Among authors: taboada en. Front Microbiol. 2017 Jun 9;8:1044. doi: 10.3389/fmicb.2017.01044. eCollection 2017. Front Microbiol. 2017. PMID: 28649236 Free PMC article.
Rapid and accurate SNP genotyping of clonal bacterial pathogens with BioHansel.
Labbé G, Kruczkiewicz P, Robertson J, Mabon P, Schonfeld J, Kein D, Rankin MA, Gopez M, Hole D, Son D, Knox N, Laing CR, Bessonov K, Taboada EN, Yoshida C, Ziebell K, Nichani A, Johnson RP, Van Domselaar G, Nash JHE. Labbé G, et al. Among authors: taboada en. Microb Genom. 2021 Sep;7(9):000651. doi: 10.1099/mgen.0.000651. Microb Genom. 2021. PMID: 34554082 Free PMC article.
Combining analytical epidemiology and genomic surveillance to identify risk factors associated with the spread of antimicrobial resistance in Salmonella enterica subsp. enterica serovar Heidelberg.
Hetman BM, Pearl DL, Barker DOR, Robertson J, Nash JHE, Reid-Smith R, Agunos A, Carrillo C, Topp E, Van Domselaar G, Parmley EJ, Bharat A, Mulvey M, Allen V, Taboada EN. Hetman BM, et al. Among authors: taboada en. Microb Genom. 2022 Nov;8(11):mgen000891. doi: 10.1099/mgen.0.000891. Microb Genom. 2022. PMID: 36748560 Free PMC article.
134 results