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Current challenges of research on filamentous fungi in relation to human welfare and a sustainable bio-economy: a white paper.
Meyer V, Andersen MR, Brakhage AA, Braus GH, Caddick MX, Cairns TC, de Vries RP, Haarmann T, Hansen K, Hertz-Fowler C, Krappmann S, Mortensen UH, Peñalva MA, Ram AFJ, Head RM. Meyer V, et al. Fungal Biol Biotechnol. 2016 Aug 31;3:6. doi: 10.1186/s40694-016-0024-8. eCollection 2016. Fungal Biol Biotechnol. 2016. PMID: 28955465 Free PMC article.
The minimum information about a genome sequence (MIGS) specification.
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, DePamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone SA, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A. Field D, et al. Nat Biotechnol. 2008 May;26(5):541-7. doi: 10.1038/nbt1360. Nat Biotechnol. 2008. PMID: 18464787 Free PMC article.
High-depth African genomes inform human migration and health.
Choudhury A, Aron S, Botigué LR, Sengupta D, Botha G, Bensellak T, Wells G, Kumuthini J, Shriner D, Fakim YJ, Ghoorah AW, Dareng E, Odia T, Falola O, Adebiyi E, Hazelhurst S, Mazandu G, Nyangiri OA, Mbiyavanga M, Benkahla A, Kassim SK, Mulder N, Adebamowo SN, Chimusa ER, Muzny D, Metcalf G, Gibbs RA; TrypanoGEN Research Group; Rotimi C, Ramsay M; H3Africa Consortium; Adeyemo AA, Lombard Z, Hanchard NA. Choudhury A, et al. Nature. 2020 Oct;586(7831):741-748. doi: 10.1038/s41586-020-2859-7. Epub 2020 Oct 28. Nature. 2020. PMID: 33116287 Free PMC article.
Author Correction: High-depth African genomes inform human migration and health.
Choudhury A, Aron S, Botigué LR, Sengupta D, Botha G, Bensellak T, Wells G, Kumuthini J, Shriner D, Fakim YJ, Ghoorah AW, Dareng E, Odia T, Falola O, Adebiyi E, Hazelhurst S, Mazandu G, Nyangiri OA, Mbiyavanga M, Benkahla A, Kassim SK, Mulder N, Adebamowo SN, Chimusa ER, Muzny D, Metcalf G, Gibbs RA; TrypanoGEN Research Group; Rotimi C, Ramsay M; H3Africa Consortium; Adeyemo AA, Lombard Z, Hanchard NA. Choudhury A, et al. Nature. 2021 Apr;592(7856):E26. doi: 10.1038/s41586-021-03286-9. Nature. 2021. PMID: 33846614 Free PMC article. No abstract available.
Genome-wide subcellular protein map for the flagellate parasite Trypanosoma brucei.
Billington K, Halliday C, Madden R, Dyer P, Barker AR, Moreira-Leite FF, Carrington M, Vaughan S, Hertz-Fowler C, Dean S, Sunter JD, Wheeler RJ, Gull K. Billington K, et al. Among authors: hertz fowler c. Nat Microbiol. 2023 Mar;8(3):533-547. doi: 10.1038/s41564-022-01295-6. Epub 2023 Feb 20. Nat Microbiol. 2023. PMID: 36804636 Free PMC article.
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center.
Amos B, Aurrecoechea C, Barba M, Barreto A, Basenko EY, Bażant W, Belnap R, Blevins AS, Böhme U, Brestelli J, Brunk BP, Caddick M, Callan D, Campbell L, Christensen MB, Christophides GK, Crouch K, Davis K, DeBarry J, Doherty R, Duan Y, Dunn M, Falke D, Fisher S, Flicek P, Fox B, Gajria B, Giraldo-Calderón GI, Harb OS, Harper E, Hertz-Fowler C, Hickman MJ, Howington C, Hu S, Humphrey J, Iodice J, Jones A, Judkins J, Kelly SA, Kissinger JC, Kwon DK, Lamoureux K, Lawson D, Li W, Lies K, Lodha D, Long J, MacCallum RM, Maslen G, McDowell MA, Nabrzyski J, Roos DS, Rund SSC, Schulman SW, Shanmugasundram A, Sitnik V, Spruill D, Starns D, Stoeckert CJ, Tomko SS, Wang H, Warrenfeltz S, Wieck R, Wilkinson PA, Xu L, Zheng J. Amos B, et al. Among authors: hertz fowler c. Nucleic Acids Res. 2022 Jan 7;50(D1):D898-D911. doi: 10.1093/nar/gkab929. Nucleic Acids Res. 2022. PMID: 34718728 Free PMC article.
Genome Assemblies across the Diverse Evolutionary Spectrum of Leishmania Protozoan Parasites.
Warren WC, Akopyants NS, Dobson DE, Hertz-Fowler C, Lye LF, Myler PJ, Ramasamy G, Shanmugasundram A, Silva-Franco F, Steinbiss S, Tomlinson C, Wilson RK, Beverley SM. Warren WC, et al. Among authors: hertz fowler c. Microbiol Resour Announc. 2021 Sep 2;10(35):e0054521. doi: 10.1128/MRA.00545-21. Epub 2021 Sep 2. Microbiol Resour Announc. 2021. PMID: 34472979 Free PMC article.
High Levels of Genetic Diversity within Nilo-Saharan Populations: Implications for Human Adaptation.
Mulindwa J, Noyes H, Ilboudo H, Pagani L, Nyangiri O, Kimuda MP, Ahouty B, Asina OF, Ofon E, Kamoto K, Kabore JW, Koffi M, Ngoyi DM, Simo G, Chisi J, Sidibe I, Enyaru J, Simuunza M, Alibu P, Jamonneau V, Camara M, Tait A, Hall N, Bucheton B, MacLeod A, Hertz-Fowler C, Matovu E; TrypanoGEN Research Group of the H3Africa Consortium. Mulindwa J, et al. Among authors: hertz fowler c. Am J Hum Genet. 2020 Sep 3;107(3):473-486. doi: 10.1016/j.ajhg.2020.07.007. Epub 2020 Aug 10. Am J Hum Genet. 2020. PMID: 32781046 Free PMC article.
Targeted Next-Generation Sequencing of 117 Routine Clinical Samples Provides Further Insights into the Molecular Landscape of Uveal Melanoma.
Thornton S, Coupland SE, Olohan L, Sibbring JS, Kenny JG, Hertz-Fowler C, Liu X, Haldenby S, Heimann H, Hussain R, Kipling N, Taktak A, Kalirai H. Thornton S, et al. Among authors: hertz fowler c. Cancers (Basel). 2020 Apr 23;12(4):1039. doi: 10.3390/cancers12041039. Cancers (Basel). 2020. PMID: 32340176 Free PMC article.
Copy number variation in human genomes from three major ethno-linguistic groups in Africa.
Nyangiri OA, Noyes H, Mulindwa J, Ilboudo H, Kabore JW, Ahouty B, Koffi M, Asina OF, Mumba D, Ofon E, Simo G, Kimuda MP, Enyaru J, Alibu VP, Kamoto K, Chisi J, Simuunza M, Camara M, Sidibe I, MacLeod A, Bucheton B, Hall N, Hertz-Fowler C, Matovu E; TrypanoGEN Research Group, as members of The H3Africa Consortium. Nyangiri OA, et al. Among authors: hertz fowler c. BMC Genomics. 2020 Apr 10;21(1):289. doi: 10.1186/s12864-020-6669-y. BMC Genomics. 2020. PMID: 32272904 Free PMC article.
71 results