Patro R - Search Results

1

deBGR: an efficient and near-exact representation of the weighted de Bruijn graph.

Pandey P, Bender MA, Johnson R, Patro R. Pandey P, et al. Among authors: patro r. Bioinformatics. 2017 Jul 15;33(14):i133-i141. doi: 10.1093/bioinformatics/btx261. Bioinformatics. 2017. PMID: 28881995 Free PMC article.

2

Reference-based compression of short-read sequences using path encoding.

Kingsford C, Patro R. Kingsford C, et al. Among authors: patro r. Bioinformatics. 2015 Jun 15;31(12):1920-8. doi: 10.1093/bioinformatics/btv071. Epub 2015 Feb 2. Bioinformatics. 2015. PMID: 25649622 Free PMC article.

3

Data-dependent bucketing improves reference-free compression of sequencing reads.

Patro R, Kingsford C. Patro R, et al. Bioinformatics. 2015 Sep 1;31(17):2770-7. doi: 10.1093/bioinformatics/btv248. Epub 2015 Apr 24. Bioinformatics. 2015. PMID: 25910696 Free PMC article.

4

TransRate: reference-free quality assessment of de novo transcriptome assemblies.

Smith-Unna R, Boursnell C, Patro R, Hibberd JM, Kelly S. Smith-Unna R, et al. Among authors: patro r. Genome Res. 2016 Aug;26(8):1134-44. doi: 10.1101/gr.196469.115. Epub 2016 Jun 1. Genome Res. 2016. PMID: 27252236 Free PMC article.

5

RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes.

Srivastava A, Sarkar H, Gupta N, Patro R. Srivastava A, et al. Among authors: patro r. Bioinformatics. 2016 Jun 15;32(12):i192-i200. doi: 10.1093/bioinformatics/btw277. Bioinformatics. 2016. PMID: 27307617 Free PMC article.

6

Improved data-driven likelihood factorizations for transcript abundance estimation.

Zakeri M, Srivastava A, Almodaresi F, Patro R. Zakeri M, et al. Among authors: patro r. Bioinformatics. 2017 Jul 15;33(14):i142-i151. doi: 10.1093/bioinformatics/btx262. Bioinformatics. 2017. PMID: 28881996 Free PMC article.

7

Quark enables semi-reference-based compression of RNA-seq data.

Sarkar H, Patro R. Sarkar H, et al. Among authors: patro r. Bioinformatics. 2017 Nov 1;33(21):3380-3386. doi: 10.1093/bioinformatics/btx428. Bioinformatics. 2017. PMID: 29077806

8

Squeakr: an exact and approximate k-mer counting system.

Pandey P, Bender MA, Johnson R, Patro R, Berger B. Pandey P, et al. Among authors: patro r. Bioinformatics. 2018 Feb 15;34(4):568-575. doi: 10.1093/bioinformatics/btx636. Bioinformatics. 2018. PMID: 29444235

9

Grouper: graph-based clustering and annotation for improved de novo transcriptome analysis.

Malik L, Almodaresi F, Patro R. Malik L, et al. Among authors: patro r. Bioinformatics. 2018 Oct 1;34(19):3265-3272. doi: 10.1093/bioinformatics/bty378. Bioinformatics. 2018. PMID: 29746620

10

Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index.

Pandey P, Almodaresi F, Bender MA, Ferdman M, Johnson R, Patro R. Pandey P, et al. Among authors: patro r. Cell Syst. 2018 Aug 22;7(2):201-207.e4. doi: 10.1016/j.cels.2018.05.021. Epub 2018 Jun 20. Cell Syst. 2018. PMID: 29936185 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

67 results

Search Page