Fujiwara T - Search Results

1

New tools and functions in data-out activities at Protein Data Bank Japan (PDBj).

Kinjo AR, Bekker GJ, Wako H, Endo S, Tsuchiya Y, Sato H, Nishi H, Kinoshita K, Suzuki H, Kawabata T, Yokochi M, Iwata T, Kobayashi N, Fujiwara T, Kurisu G, Nakamura H. Kinjo AR, et al. Among authors: fujiwara t. Protein Sci. 2018 Jan;27(1):95-102. doi: 10.1002/pro.3273. Epub 2017 Sep 18. Protein Sci. 2018. PMID: 28815765 Free PMC article.

2

An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database.

Kobayashi N, Harano Y, Tochio N, Nakatani E, Kigawa T, Yokoyama S, Mading S, Ulrich EL, Markley JL, Akutsu H, Fujiwara T. Kobayashi N, et al. Among authors: fujiwara t. J Biomol NMR. 2012 Aug;53(4):311-20. doi: 10.1007/s10858-012-9641-6. Epub 2012 Jun 13. J Biomol NMR. 2012. PMID: 22689068 Free PMC article.

3

(1)H, (15)N and (13)C resonance assignments of the conserved region in the middle domain of S. pombe Sin1 protein.

Kataoka S, Furuita K, Hattori Y, Kobayashi N, Ikegami T, Shiozaki K, Fujiwara T, Kojima C. Kataoka S, et al. Among authors: fujiwara t. Biomol NMR Assign. 2015 Apr;9(1):89-92. doi: 10.1007/s12104-014-9550-6. Epub 2014 Mar 8. Biomol NMR Assign. 2015. PMID: 24610629

4

Utilization of paramagnetic relaxation enhancements for high-resolution NMR structure determination of a soluble loop-rich protein with sparse NOE distance restraints.

Furuita K, Kataoka S, Sugiki T, Hattori Y, Kobayashi N, Ikegami T, Shiozaki K, Fujiwara T, Kojima C. Furuita K, et al. Among authors: fujiwara t. J Biomol NMR. 2015 Jan;61(1):55-64. doi: 10.1007/s10858-014-9882-7. Epub 2014 Nov 27. J Biomol NMR. 2015. PMID: 25428765

5

Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins.

Yokochi M, Kobayashi N, Ulrich EL, Kinjo AR, Iwata T, Ioannidis YE, Livny M, Markley JL, Nakamura H, Kojima C, Fujiwara T. Yokochi M, et al. Among authors: fujiwara t. J Biomed Semantics. 2016 May 5;7(1):16. doi: 10.1186/s13326-016-0057-1. J Biomed Semantics. 2016. PMID: 27927232 Free PMC article.

6

Modern Technologies of Solution Nuclear Magnetic Resonance Spectroscopy for Three-dimensional Structure Determination of Proteins Open Avenues for Life Scientists.

Sugiki T, Kobayashi N, Fujiwara T. Sugiki T, et al. Among authors: fujiwara t. Comput Struct Biotechnol J. 2017 Apr 13;15:328-339. doi: 10.1016/j.csbj.2017.04.001. eCollection 2017. Comput Struct Biotechnol J. 2017. PMID: 28487762 Free PMC article. Review.

7

Noise peak filtering in multi-dimensional NMR spectra using convolutional neural networks.

Kobayashi N, Hattori Y, Nagata T, Shinya S, Güntert P, Kojima C, Fujiwara T. Kobayashi N, et al. Among authors: fujiwara t. Bioinformatics. 2018 Dec 15;34(24):4300-4301. doi: 10.1093/bioinformatics/bty581. Bioinformatics. 2018. PMID: 29985974

8

Protein Data Bank: the single global archive for 3D macromolecular structure data.

wwPDB consortium. wwPDB consortium. Nucleic Acids Res. 2019 Jan 8;47(D1):D520-D528. doi: 10.1093/nar/gky949. Nucleic Acids Res. 2019. PMID: 30357364 Free PMC article.

9

BioMagResBank (BMRB) as a Resource for Structural Biology.

Romero PR, Kobayashi N, Wedell JR, Baskaran K, Iwata T, Yokochi M, Maziuk D, Yao H, Fujiwara T, Kurusu G, Ulrich EL, Hoch JC, Markley JL. Romero PR, et al. Among authors: fujiwara t. Methods Mol Biol. 2020;2112:187-218. doi: 10.1007/978-1-0716-0270-6_14. Methods Mol Biol. 2020. PMID: 32006287 Free PMC article.

10

Robust folding of a de novo designed ideal protein even with most of the core mutated to valine.

Koga R, Yamamoto M, Kosugi T, Kobayashi N, Sugiki T, Fujiwara T, Koga N. Koga R, et al. Among authors: fujiwara t. Proc Natl Acad Sci U S A. 2020 Dec 8;117(49):31149-31156. doi: 10.1073/pnas.2002120117. Epub 2020 Nov 23. Proc Natl Acad Sci U S A. 2020. PMID: 33229587 Free PMC article.

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