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Rationally designed peptide nanosponges for cell-based cancer therapy.
Nanomedicine. 2017 Nov;13(8):2555-2564. doi: 10.1016/j.nano.2017.07.004. Epub 2017 Jul 25.
Nanomedicine. 2017.
PMID: 28754467
SLTCAP: A Simple Method for Calculating the Number of Ions Needed for MD Simulation.
Schmit JD, Kariyawasam NL, Needham V, Smith PE.
Schmit JD, et al. Among authors: kariyawasam nl.
J Chem Theory Comput. 2018 Apr 10;14(4):1823-1827. doi: 10.1021/acs.jctc.7b01254. Epub 2018 Mar 16.
J Chem Theory Comput. 2018.
PMID: 29506385
Free PMC article.
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Kirkwood-Buff-Derived Force Field for Peptides and Proteins: Philosophy and Development of KBFF20.
Ploetz EA, Karunaweera S, Bentenitis N, Chen F, Dai S, Gee MB, Jiao Y, Kang M, Kariyawasam NL, Naleem N, Weerasinghe S, Smith PE.
Ploetz EA, et al. Among authors: kariyawasam nl.
J Chem Theory Comput. 2021 May 11;17(5):2964-2990. doi: 10.1021/acs.jctc.1c00075. Epub 2021 Apr 20.
J Chem Theory Comput. 2021.
PMID: 33878263
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Peptide nanosponges designed for rapid uptake by leukocytes and neural stem cells.
Yapa AS, Wang H, Wendel SO, Shrestha TB, Kariyawasam NL, Kalubowilage M, Perera AS, Pyle M, Basel MT, Malalasekera AP, Manawadu H, Yu J, Toledo Y, Ortega R, Thapa PS, Smith PE, Troyer DL, Bossmann SH.
Yapa AS, et al. Among authors: kariyawasam nl.
RSC Adv. 2018 Apr 30;8(29):16052-16060. doi: 10.1039/c8ra00717a. eCollection 2018 Apr 27.
RSC Adv. 2018.
PMID: 35542227
Free PMC article.
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Simulated pressure changes in LacI suggest a link between hydration and functional conformational changes.
Kariyawasam NL, Ploetz EA, Swint-Kruse L, Smith PE.
Kariyawasam NL, et al.
Biophys Chem. 2024 Jan;304:107126. doi: 10.1016/j.bpc.2023.107126. Epub 2023 Oct 26.
Biophys Chem. 2024.
PMID: 37924711
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Modeling allosteric mechanisms of eukaryotic type II topoisomerases.
Evoli S, Kariyawasam NL, Nitiss KC, Nitiss JL, Wereszczynski J.
Evoli S, et al. Among authors: kariyawasam nl.
Biophys J. 2024 May 8:S0006-3495(24)00318-7. doi: 10.1016/j.bpj.2024.05.004. Online ahead of print.
Biophys J. 2024.
PMID: 38720465
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Modeling Allosteric Mechanisms of Eukaryotic Type II Topoisomerases.
Evoli S, Kariyawasam NL, Nitiss KC, Nitiss JL, Wereszczynski J.
Evoli S, et al. Among authors: kariyawasam nl.
bioRxiv [Preprint]. 2024 Mar 24:2023.08.02.551689. doi: 10.1101/2023.08.02.551689.
bioRxiv. 2024.
PMID: 37577673
Free PMC article.
Updated.
Preprint.
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