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iDoComp: a compression scheme for assembled genomes.
Ochoa I, Hernaez M, Weissman T. Ochoa I, et al. Among authors: weissman t. Bioinformatics. 2015 Mar 1;31(5):626-33. doi: 10.1093/bioinformatics/btu698. Epub 2014 Oct 24. Bioinformatics. 2015. PMID: 25344501 Free PMC article.
smallWig: parallel compression of RNA-seq WIG files.
Wang Z, Weissman T, Milenkovic O. Wang Z, et al. Among authors: weissman t. Bioinformatics. 2016 Jan 15;32(2):173-80. doi: 10.1093/bioinformatics/btv561. Epub 2015 Sep 30. Bioinformatics. 2016. PMID: 26424856 Free PMC article.
Aligned genomic data compression via improved modeling.
Ochoa I, Hernaez M, Weissman T. Ochoa I, et al. Among authors: weissman t. J Bioinform Comput Biol. 2014 Dec;12(6):1442002. doi: 10.1142/S0219720014420025. J Bioinform Comput Biol. 2014. PMID: 25395305 Free PMC article.
QVZ: lossy compression of quality values.
Malysa G, Hernaez M, Ochoa I, Rao M, Ganesan K, Weissman T. Malysa G, et al. Among authors: weissman t. Bioinformatics. 2015 Oct 1;31(19):3122-9. doi: 10.1093/bioinformatics/btv330. Epub 2015 May 28. Bioinformatics. 2015. PMID: 26026138 Free PMC article.
Denoising of Quality Scores for Boosted Inference and Reduced Storage.
Ochoa I, Hernaez M, Goldfeder R, Weissman T, Ashley E. Ochoa I, et al. Among authors: weissman t. Proc Data Compress Conf. 2016 Mar-Apr;2016:251-260. doi: 10.1109/DCC.2016.92. Epub 2016 Dec 19. Proc Data Compress Conf. 2016. PMID: 29098178 Free PMC article.
SPRING: a next-generation compressor for FASTQ data.
Chandak S, Tatwawadi K, Ochoa I, Hernaez M, Weissman T. Chandak S, et al. Among authors: weissman t. Bioinformatics. 2019 Aug 1;35(15):2674-2676. doi: 10.1093/bioinformatics/bty1015. Bioinformatics. 2019. PMID: 30535063 Free PMC article.
68 results