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Metagenomics: The Next Culture-Independent Game Changer.
Forbes JD, Knox NC, Ronholm J, Pagotto F, Reimer A. Forbes JD, et al. Among authors: pagotto f. Front Microbiol. 2017 Jul 4;8:1069. doi: 10.3389/fmicb.2017.01069. eCollection 2017. Front Microbiol. 2017. PMID: 28725217 Free PMC article. Review.
Sequence typing confirms that a predominant Listeria monocytogenes clone caused human listeriosis cases and outbreaks in Canada from 1988 to 2010.
Knabel SJ, Reimer A, Verghese B, Lok M, Ziegler J, Farber J, Pagotto F, Graham M, Nadon CA; Canadian Public Health Laboratory Network (CPHLN); Gilmour MW. Knabel SJ, et al. Among authors: pagotto f. J Clin Microbiol. 2012 May;50(5):1748-51. doi: 10.1128/JCM.06185-11. Epub 2012 Feb 15. J Clin Microbiol. 2012. PMID: 22337989 Free PMC article.
Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations.
Marinier E, Zaheer R, Berry C, Weedmark KA, Domaratzki M, Mabon P, Knox NC, Reimer AR, Graham MR, Chui L, Patterson-Fortin L, Zhang J, Pagotto F, Farber J, Mahony J, Seyer K, Bekal S, Tremblay C, Isaac-Renton J, Prystajecky N, Chen J, Slade P, Van Domselaar G. Marinier E, et al. Among authors: pagotto f. Nucleic Acids Res. 2017 Oct 13;45(18):e159. doi: 10.1093/nar/gkx702. Nucleic Acids Res. 2017. PMID: 29048594 Free PMC article.
Shared genome analyses of notable listeriosis outbreaks, highlighting the critical importance of epidemiological evidence, input datasets and interpretation criteria.
Reimer A, Weedmark K, Petkau A, Peterson CL, Walker M, Knox N, Kent H, Mabon P, Berry C, Tyler S, Tschetter L, Jerome M, Allen V, Hoang L, Bekal S, Clark C, Nadon C, Van Domselaar G, Pagotto F, Graham M, Farber J, Gilmour M. Reimer A, et al. Among authors: pagotto f. Microb Genom. 2019 Jan;5(1):e000237. doi: 10.1099/mgen.0.000237. Epub 2019 Jan 16. Microb Genom. 2019. PMID: 30648944 Free PMC article.
Changes detected in the genome sequences of Escherichia coli, Listeria monocytogenes, Vibrio parahaemolyticus, and Salmonella enterica after serial subculturing.
Petronella N, Kundra P, Auclair O, Hébert K, Rao M, Kingsley K, De Bruyne K, Banerjee S, Gill A, Pagotto F, Tamber S, Ronholm J. Petronella N, et al. Among authors: pagotto f. Can J Microbiol. 2019 Nov;65(11):842-850. doi: 10.1139/cjm-2019-0235. Epub 2019 Jul 29. Can J Microbiol. 2019. PMID: 31356758
Development of a Custom-Designed, Pan Genomic DNA Microarray to Characterize Strain-Level Diversity among Cronobacter spp.
Tall BD, Gangiredla J, Gopinath GR, Yan Q, Chase HR, Lee B, Hwang S, Trach L, Park E, Yoo Y, Chung T, Jackson SA, Patel IR, Sathyamoorthy V, Pava-Ripoll M, Kotewicz ML, Carter L, Iversen C, Pagotto F, Stephan R, Lehner A, Fanning S, Grim CJ. Tall BD, et al. Among authors: pagotto f. Front Pediatr. 2015 Apr 30;3:36. doi: 10.3389/fped.2015.00036. eCollection 2015. Front Pediatr. 2015. PMID: 25984509 Free PMC article.
78 results