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How Not To Drown in Data: A Guide for Biomaterial Engineers.
Vasilevich AS, Carlier A, de Boer J, Singh S. Vasilevich AS, et al. Among authors: singh s. Trends Biotechnol. 2017 Aug;35(8):743-755. doi: 10.1016/j.tibtech.2017.05.007. Epub 2017 Jul 7. Trends Biotechnol. 2017. PMID: 28693857 Review.
Mining for osteogenic surface topographies: In silico design to in vivo osseo-integration.
Hulshof FFB, Papenburg B, Vasilevich A, Hulsman M, Zhao Y, Levers M, Fekete N, de Boer M, Yuan H, Singh S, Beijer N, Bray MA, Logan DJ, Reinders M, Carpenter AE, van Blitterswijk C, Stamatialis D, de Boer J. Hulshof FFB, et al. Among authors: singh s. Biomaterials. 2017 Aug;137:49-60. doi: 10.1016/j.biomaterials.2017.05.020. Epub 2017 May 12. Biomaterials. 2017. PMID: 28535442
Data-analysis strategies for image-based cell profiling.
Caicedo JC, Cooper S, Heigwer F, Warchal S, Qiu P, Molnar C, Vasilevich AS, Barry JD, Bansal HS, Kraus O, Wawer M, Paavolainen L, Herrmann MD, Rohban M, Hung J, Hennig H, Concannon J, Smith I, Clemons PA, Singh S, Rees P, Horvath P, Linington RG, Carpenter AE. Caicedo JC, et al. Among authors: singh s. Nat Methods. 2017 Aug 31;14(9):849-863. doi: 10.1038/nmeth.4397. Nat Methods. 2017. PMID: 28858338 Free PMC article.
Designed Surface Topographies Control ICAM-1 Expression in Tonsil-Derived Human Stromal Cells.
Vasilevich AS, Mourcin F, Mentink A, Hulshof F, Beijer N, Zhao Y, Levers M, Papenburg B, Singh S, Carpenter AE, Stamatialis D, van Blitterswijk C, Tarte K, de Boer J. Vasilevich AS, et al. Among authors: singh s. Front Bioeng Biotechnol. 2018 Jun 28;6:87. doi: 10.3389/fbioe.2018.00087. eCollection 2018. Front Bioeng Biotechnol. 2018. PMID: 30003080 Free PMC article.
Applications in image-based profiling of perturbations.
Caicedo JC, Singh S, Carpenter AE. Caicedo JC, et al. Among authors: singh s. Curr Opin Biotechnol. 2016 Jun;39:134-142. doi: 10.1016/j.copbio.2016.04.003. Epub 2016 Apr 17. Curr Opin Biotechnol. 2016. PMID: 27089218 Free article. Review.
Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl.
Caicedo JC, Goodman A, Karhohs KW, Cimini BA, Ackerman J, Haghighi M, Heng C, Becker T, Doan M, McQuin C, Rohban M, Singh S, Carpenter AE. Caicedo JC, et al. Among authors: singh s. Nat Methods. 2019 Dec;16(12):1247-1253. doi: 10.1038/s41592-019-0612-7. Epub 2019 Oct 21. Nat Methods. 2019. PMID: 31636459 Free PMC article.
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