Colaprico A - Search Results

1

CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation and visualization.

Xu T, Le TD, Liu L, Su N, Wang R, Sun B, Colaprico A, Bontempi G, Li J. Xu T, et al. Among authors: colaprico a. Bioinformatics. 2017 Oct 1;33(19):3131-3133. doi: 10.1093/bioinformatics/btx378. Bioinformatics. 2017. PMID: 28605519

2

Integrative Analysis with Monte Carlo Cross-Validation Reveals miRNAs Regulating Pathways Cross-Talk in Aggressive Breast Cancer.

Colaprico A, Cava C, Bertoli G, Bontempi G, Castiglioni I. Colaprico A, et al. Biomed Res Int. 2015;2015:831314. doi: 10.1155/2015/831314. Epub 2015 Jul 9. Biomed Res Int. 2015. PMID: 26240829 Free PMC article.

3

TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data.

Colaprico A, Silva TC, Olsen C, Garofano L, Cava C, Garolini D, Sabedot TS, Malta TM, Pagnotta SM, Castiglioni I, Ceccarelli M, Bontempi G, Noushmehr H. Colaprico A, et al. Nucleic Acids Res. 2016 May 5;44(8):e71. doi: 10.1093/nar/gkv1507. Epub 2015 Dec 23. Nucleic Acids Res. 2016. PMID: 26704973 Free PMC article.

4

SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data.

Cava C, Colaprico A, Bertoli G, Graudenzi A, Silva TC, Olsen C, Noushmehr H, Bontempi G, Mauri G, Castiglioni I. Cava C, et al. Among authors: colaprico a. Int J Mol Sci. 2017 Jan 27;18(2):274. doi: 10.3390/ijms18020274. Int J Mol Sci. 2017. PMID: 28134831 Free PMC article.

5

How interacting pathways are regulated by miRNAs in breast cancer subtypes.

Cava C, Colaprico A, Bertoli G, Bontempi G, Mauri G, Castiglioni I. Cava C, et al. Among authors: colaprico a. BMC Bioinformatics. 2016 Nov 8;17(Suppl 12):348. doi: 10.1186/s12859-016-1196-1. BMC Bioinformatics. 2016. PMID: 28185585 Free PMC article.

6

TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages.

Silva TC, Colaprico A, Olsen C, D'Angelo F, Bontempi G, Ceccarelli M, Noushmehr H. Silva TC, et al. Among authors: colaprico a. F1000Res. 2016 Jun 29;5:1542. doi: 10.12688/f1000research.8923.2. eCollection 2016. F1000Res. 2016. PMID: 28232861 Free PMC article.

7

Combination of Gene Expression Signature and Model for End-Stage Liver Disease Score Predicts Survival of Patients With Severe Alcoholic Hepatitis.

Trépo E, Goossens N, Fujiwara N, Song WM, Colaprico A, Marot A, Spahr L, Demetter P, Sempoux C, Im GY, Saldarriaga J, Gustot T, Devière J, Thung SN, Minsart C, Sersté T, Bontempi G, Abdelrahman K, Henrion J, Degré D, Lucidi V, Rubbia-Brandt L, Nair VD, Moreno C, Deltenre P, Hoshida Y, Franchimont D. Trépo E, et al. Among authors: colaprico a. Gastroenterology. 2018 Mar;154(4):965-975. doi: 10.1053/j.gastro.2017.10.048. Epub 2017 Nov 20. Gastroenterology. 2018. PMID: 29158192 Free PMC article.

8

Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis.

Cava C, Bertoli G, Colaprico A, Olsen C, Bontempi G, Castiglioni I. Cava C, et al. Among authors: colaprico a. BMC Genomics. 2018 Jan 6;19(1):25. doi: 10.1186/s12864-017-4423-x. BMC Genomics. 2018. PMID: 29304754 Free PMC article.

9

In-Silico Integration Approach to Identify a Key miRNA Regulating a Gene Network in Aggressive Prostate Cancer.

Cava C, Bertoli G, Colaprico A, Bontempi G, Mauri G, Castiglioni I. Cava C, et al. Among authors: colaprico a. Int J Mol Sci. 2018 Mar 19;19(3):910. doi: 10.3390/ijms19030910. Int J Mol Sci. 2018. PMID: 29562723 Free PMC article.

10

New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx.

Mounir M, Lucchetta M, Silva TC, Olsen C, Bontempi G, Chen X, Noushmehr H, Colaprico A, Papaleo E. Mounir M, et al. Among authors: colaprico a. PLoS Comput Biol. 2019 Mar 5;15(3):e1006701. doi: 10.1371/journal.pcbi.1006701. eCollection 2019 Mar. PLoS Comput Biol. 2019. PMID: 30835723 Free PMC article.

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