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Genome Rearrangement with ILP.
Hartmann T, Wieseke N, Sharan R, Middendorf M, Bernt M. Hartmann T, et al. Among authors: wieseke n. IEEE/ACM Trans Comput Biol Bioinform. 2018 Sep-Oct;15(5):1585-1593. doi: 10.1109/TCBB.2017.2708121. Epub 2017 May 25. IEEE/ACM Trans Comput Biol Bioinform. 2018. PMID: 28574364
Phylogenomics with paralogs.
Hellmuth M, Wieseke N, Lechner M, Lenhof HP, Middendorf M, Stadler PF. Hellmuth M, et al. Among authors: wieseke n. Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):2058-63. doi: 10.1073/pnas.1412770112. Epub 2015 Feb 2. Proc Natl Acad Sci U S A. 2015. PMID: 25646426 Free PMC article.
Cophylogenetic Reconciliation with ILP.
Wieseke N, Hartmann T, Bernt M, Middendorf M. Wieseke N, et al. IEEE/ACM Trans Comput Biol Bioinform. 2015 Nov-Dec;12(6):1227-35. doi: 10.1109/TCBB.2015.2430336. IEEE/ACM Trans Comput Biol Bioinform. 2015. PMID: 26671795
Relative timing information and orthology in evolutionary scenarios.
Schaller D, Hartmann T, Lafond M, Stadler PF, Wieseke N, Hellmuth M. Schaller D, et al. Among authors: wieseke n. Algorithms Mol Biol. 2023 Nov 8;18(1):16. doi: 10.1186/s13015-023-00240-4. Algorithms Mol Biol. 2023. PMID: 37940998 Free PMC article.
Re-assessing the diversity of negative strand RNA viruses in insects.
Käfer S, Paraskevopoulou S, Zirkel F, Wieseke N, Donath A, Petersen M, Jones TC, Liu S, Zhou X, Middendorf M, Junglen S, Misof B, Drosten C. Käfer S, et al. Among authors: wieseke n. PLoS Pathog. 2019 Dec 12;15(12):e1008224. doi: 10.1371/journal.ppat.1008224. eCollection 2019 Dec. PLoS Pathog. 2019. PMID: 31830128 Free PMC article.
Orthology relations, symbolic ultrametrics, and cographs.
Hellmuth M, Hernandez-Rosales M, Huber KT, Moulton V, Stadler PF, Wieseke N. Hellmuth M, et al. Among authors: wieseke n. J Math Biol. 2013 Jan;66(1-2):399-420. doi: 10.1007/s00285-012-0525-x. Epub 2012 Mar 29. J Math Biol. 2013. PMID: 22456957
24 results