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Genome Rearrangement with ILP.
Hartmann T, Wieseke N, Sharan R, Middendorf M, Bernt M. Hartmann T, et al. Among authors: sharan r. IEEE/ACM Trans Comput Biol Bioinform. 2018 Sep-Oct;15(5):1585-1593. doi: 10.1109/TCBB.2017.2708121. Epub 2017 May 25. IEEE/ACM Trans Comput Biol Bioinform. 2018. PMID: 28574364
Islands of tractability for parsimony haplotyping.
Sharan R, Halldórsson BV, Istrail S. Sharan R, et al. IEEE/ACM Trans Comput Biol Bioinform. 2006 Jul-Sep;3(3):303-11. doi: 10.1109/TCBB.2006.40. IEEE/ACM Trans Comput Biol Bioinform. 2006. PMID: 17048467
Network orientation via shortest paths.
Silverbush D, Sharan R. Silverbush D, et al. Among authors: sharan r. Bioinformatics. 2014 May 15;30(10):1449-55. doi: 10.1093/bioinformatics/btu043. Epub 2014 Jan 27. Bioinformatics. 2014. PMID: 24470573
Optimally orienting physical networks.
Silverbush D, Elberfeld M, Sharan R. Silverbush D, et al. Among authors: sharan r. J Comput Biol. 2011 Nov;18(11):1437-48. doi: 10.1089/cmb.2011.0163. Epub 2011 Oct 14. J Comput Biol. 2011. PMID: 21999286
Analysis of SNP-expression association matrices.
Tsalenko A, Sharan R, Kristensen V, Edvardsen H, Børresen-Dale AL, Ben-Dor A, Yakhini Z. Tsalenko A, et al. Among authors: sharan r. J Bioinform Comput Biol. 2006 Apr;4(2):259-74. doi: 10.1142/s0219720006001953. J Bioinform Comput Biol. 2006. PMID: 16819783
QNet: a tool for querying protein interaction networks.
Dost B, Shlomi T, Gupta N, Ruppin E, Bafna V, Sharan R. Dost B, et al. Among authors: sharan r. J Comput Biol. 2008 Sep;15(7):913-25. doi: 10.1089/cmb.2007.0172. J Comput Biol. 2008. PMID: 18707533
381 results