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Genome Rearrangement with ILP.
Hartmann T, Wieseke N, Sharan R, Middendorf M, Bernt M. Hartmann T, et al. Among authors: middendorf m. IEEE/ACM Trans Comput Biol Bioinform. 2018 Sep-Oct;15(5):1585-1593. doi: 10.1109/TCBB.2017.2708121. Epub 2017 May 25. IEEE/ACM Trans Comput Biol Bioinform. 2018. PMID: 28574364
Using median sets for inferring phylogenetic trees.
Bernt M, Merkle D, Middendorf M. Bernt M, et al. Among authors: middendorf m. Bioinformatics. 2007 Jan 15;23(2):e129-35. doi: 10.1093/bioinformatics/btl300. Bioinformatics. 2007. PMID: 17237080
CREx: inferring genomic rearrangements based on common intervals.
Bernt M, Merkle D, Ramsch K, Fritzsch G, Perseke M, Bernhard D, Schlegel M, Stadler PF, Middendorf M. Bernt M, et al. Among authors: middendorf m. Bioinformatics. 2007 Nov 1;23(21):2957-8. doi: 10.1093/bioinformatics/btm468. Epub 2007 Sep 25. Bioinformatics. 2007. PMID: 17895271
Evolution of mitochondrial gene orders in echinoderms.
Perseke M, Fritzsch G, Ramsch K, Bernt M, Merkle D, Middendorf M, Bernhard D, Stadler PF, Schlegel M. Perseke M, et al. Among authors: middendorf m. Mol Phylogenet Evol. 2008 May;47(2):855-64. doi: 10.1016/j.ympev.2007.11.034. Epub 2007 Dec 15. Mol Phylogenet Evol. 2008. PMID: 18280182
Solving the preserving reversal median problem.
Bernt M, Merkle D, Middendorf M. Bernt M, et al. Among authors: middendorf m. IEEE/ACM Trans Comput Biol Bioinform. 2008 Jul-Sep;5(3):332-47. doi: 10.1109/TCBB.2008.39. IEEE/ACM Trans Comput Biol Bioinform. 2008. PMID: 18670038
MITOS: improved de novo metazoan mitochondrial genome annotation.
Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. Bernt M, et al. Among authors: middendorf m. Mol Phylogenet Evol. 2013 Nov;69(2):313-9. doi: 10.1016/j.ympev.2012.08.023. Epub 2012 Sep 7. Mol Phylogenet Evol. 2013. PMID: 22982435
72 results